Variant report

Variant	rs16886867
Chromosome Location	chr7:80570530-80570531
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:16)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:16 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:80569413..80574847-chr7:80699987..80704923,10	MCF-7	breast:
2	chr7:80569987..80572851-chr7:80884552..80889761,8	MCF-7	breast:
3	chr7:80570278..80572086-chr7:80815972..80818560,2	MCF-7	breast:
4	chr7:80569560..80571494-chr7:80881761..80883574,2	MCF-7	breast:
5	chr7:80568560..80571275-chr7:81069609..81073018,3	MCF-7	breast:
6	chr7:80569841..80573432-chr7:81092490..81095821,3	MCF-7	breast:
7	chr7:80570440..80573210-chr7:80694218..80696148,2	MCF-7	breast:
8	chr7:80570445..80573184-chr7:81084491..81088417,3	MCF-7	breast:
9	chr7:80570216..80571747-chr7:80803128..80806062,2	MCF-7	breast:
10	chr7:80570519..80573316-chr7:80792715..80798037,5	MCF-7	breast:
11	chr7:80568637..80573447-chr7:80883895..80888715,7	MCF-7	breast:
12	chr7:80570359..80572811-chr7:80898526..80900514,2	MCF-7	breast:
13	chr7:80570369..80572451-chr7:80702280..80705942,3	MCF-7	breast:
14	chr7:80568680..80571770-chr7:81074314..81077443,3	MCF-7	breast:
15	chr7:80570260..80572576-chr7:81081719..81084256,2	MCF-7	breast:
16	chr7:80513607..80515938-chr7:80569348..80571961,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000232968	Chromatin interaction
ENSG00000237896	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs17154601	0.88[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888524	chr7:80107798-80723062	Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv1034690	chr7:80520004-80987682	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv888548	chr7:80553950-80587737	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv888549	chr7:80553950-80652059	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:80564200-80571400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr7:80569400-80571200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr7:80569400-80572000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr7:80569400-80573400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr7:80569400-80573800	Enhancers	HMEC	breast
6	chr7:80569600-80570600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr7:80569600-80570800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr7:80569600-80571400	Enhancers	Placenta Amnion	Placenta Amnion
9	chr7:80569600-80571600	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr7:80569600-80572200	Enhancers	HSMM	muscle
11	chr7:80569600-80572200	Enhancers	NHDF-Ad	bronchial
12	chr7:80569600-80572400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr7:80569600-80573200	Enhancers	NHLF	lung
14	chr7:80569800-80570800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr7:80569800-80570800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr7:80569800-80571000	Enhancers	Colon Smooth Muscle	Colon
17	chr7:80569800-80571000	Enhancers	Sigmoid Colon	Sigmoid Colon
18	chr7:80569800-80571000	Flanking Active TSS	A549	lung
19	chr7:80569800-80572000	Enhancers	Rectal Mucosa Donor 31	rectum
20	chr7:80569800-80572000	Enhancers	Rectal Smooth Muscle	rectum
21	chr7:80569800-80572200	Enhancers	Primary monocytes fromperipheralblood	blood
22	chr7:80569800-80572400	Enhancers	Hela-S3	cervix
23	chr7:80569800-80573000	Enhancers	NH-A	brain
24	chr7:80569800-80573000	Enhancers	Osteobl	bone
25	chr7:80570000-80570600	Flanking Active TSS	NHEK	skin
26	chr7:80570000-80570800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr7:80570000-80570800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr7:80570000-80570800	Enhancers	Psoas Muscle	Psoas
29	chr7:80570000-80571000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
30	chr7:80570000-80571000	Enhancers	Fetal Kidney	kidney
31	chr7:80570000-80571000	Enhancers	Fetal Muscle Leg	muscle
32	chr7:80570000-80571200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr7:80570000-80572000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr7:80570000-80572000	Enhancers	Fetal Intestine Large	intestine
35	chr7:80570000-80572200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr7:80570000-80572200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr7:80570000-80572200	Enhancers	Fetal Intestine Small	intestine
38	chr7:80570000-80572200	Enhancers	Skeletal Muscle Male	skeletal muscle
39	chr7:80570000-80572400	Enhancers	Adipose Nuclei	Adipose
40	chr7:80570000-80572800	Enhancers	Fetal Lung	lung
41	chr7:80570000-80573000	Enhancers	HUVEC	blood vessel
42	chr7:80570200-80570800	Weak transcription	Gastric	stomach
43	chr7:80570200-80571200	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr7:80570200-80572000	Enhancers	Stomach Smooth Muscle	stomach
45	chr7:80570200-80572200	Enhancers	Skeletal Muscle Female	skeletal muscle
46	chr7:80570400-80570600	Flanking Active TSS	HSMMtube	muscle
47	chr7:80570400-80570600	Enhancers	Monocytes-CD14+_RO01746	blood
48	chr7:80570400-80570800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr7:80570400-80570800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
50	chr7:80570400-80571800	Weak transcription	Placenta	Placenta

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