Variant report

Variant	rs16887003
Chromosome Location	chr7:80799753-80799754
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12668447	0.83[AMR][1000 genomes]
rs1553800	0.96[AMR][1000 genomes]
rs17154861	0.89[AMR][1000 genomes]
rs17154884	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs17154888	0.83[AMR][1000 genomes]
rs59912921	0.85[AMR][1000 genomes]
rs73149332	0.81[AMR][1000 genomes]
rs73151248	0.85[AMR][1000 genomes]
rs763479	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034690	chr7:80520004-80987682	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv831044	chr7:80721773-80918591	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:80792600-80803000	Weak transcription	K562	blood
2	chr7:80798800-80800200	Enhancers	Muscle Satellite Cultured Cells	--
3	chr7:80798800-80800200	Enhancers	A549	lung
4	chr7:80799200-80799800	Weak transcription	HSMM	muscle
5	chr7:80799400-80800200	Enhancers	NHLF	lung
6	chr7:80799600-80800000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr7:80799600-80800000	Enhancers	Osteobl	bone
8	chr7:80799600-80800200	Enhancers	NH-A	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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