Variant report

Variant	rs17154861
Chromosome Location	chr7:80805493-80805494
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12668447	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12670329	1.00[ASN][1000 genomes]
rs1553800	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs16887003	0.89[AMR][1000 genomes]
rs17154884	0.96[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs17154888	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59912921	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73149332	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73151248	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs763479	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034690	chr7:80520004-80987682	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv831044	chr7:80721773-80918591	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:80803000-80805600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:80803000-80805600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr7:80803000-80805600	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr7:80803600-80810600	Weak transcription	HepG2	liver
5	chr7:80803800-80819800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr7:80804600-80805600	Enhancers	NHLF	lung
7	chr7:80805000-80819800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr7:80805200-80805600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr7:80805200-80808600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr7:80805400-80805600	Enhancers	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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