Variant report

Variant	rs16887333
Chromosome Location	chr6:55742926-55742927
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10485079	0.96[AMR][1000 genomes]
rs1073473	0.85[JPT][hapmap]
rs12660631	0.85[AMR][1000 genomes]
rs12662574	0.82[AMR][1000 genomes]
rs1447130	0.82[AMR][1000 genomes]
rs16887320	1.00[CEU][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16887397	0.85[AMR][1000 genomes]
rs16887398	0.85[AMR][1000 genomes]
rs16887399	0.85[AMR][1000 genomes]
rs16887402	0.85[AMR][1000 genomes]
rs17683736	1.00[JPT][hapmap]
rs17736107	0.96[AMR][1000 genomes]
rs2197643	0.85[AMR][1000 genomes]
rs3798821	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6915768	0.86[JPT][hapmap]
rs6931303	0.85[AMR][1000 genomes]
rs9475448	0.82[AMR][1000 genomes]
rs9475451	0.82[AMR][1000 genomes]
rs9885708	0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034037	chr6:55222409-56069600	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv2752670	chr6:55614978-55781605	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv1032684	chr6:55680473-55766876	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1024174	chr6:55713889-55829936	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv1029301	chr6:55713889-55834480	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:55740400-55746600	Weak transcription	A549	lung
2	chr6:55740800-55743400	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr6:55740800-55743400	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr6:55741200-55743600	Enhancers	Fetal Heart	heart
5	chr6:55741200-55747400	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr6:55742000-55745800	Weak transcription	Hela-S3	cervix
7	chr6:55742200-55743200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr6:55742800-55743400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr6:55742800-55747600	Weak transcription	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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