Variant report

Variant	rs17736107
Chromosome Location	chr6:55748928-55748929
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:55412158..55414482-chr6:55747955..55749467,2	MCF-7	breast:
2	chr6:55747110..55749707-chr6:55758918..55761068,2	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10485079	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12660631	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12662574	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12665450	0.88[EUR][1000 genomes]
rs1447130	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs16887320	0.96[AMR][1000 genomes]
rs16887333	1.00[JPT][hapmap];0.96[AMR][1000 genomes]
rs16887397	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16887398	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16887399	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16887402	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17683688	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17683736	1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1868033	0.87[EUR][1000 genomes]
rs1900526	0.86[EUR][1000 genomes]
rs1900527	0.88[EUR][1000 genomes]
rs2084290	0.87[EUR][1000 genomes]
rs2100105	0.87[EUR][1000 genomes]
rs2100107	0.87[EUR][1000 genomes]
rs2197643	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3798821	0.96[AMR][1000 genomes]
rs6459117	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6906682	0.96[ASN][1000 genomes]
rs6915768	0.86[JPT][hapmap]
rs6931303	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6939815	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9475448	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9475451	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9885708	0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034037	chr6:55222409-56069600	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv2752670	chr6:55614978-55781605	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv1032684	chr6:55680473-55766876	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1024174	chr6:55713889-55829936	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv1029301	chr6:55713889-55834480	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:55745600-55750600	Enhancers	Fetal Heart	heart
2	chr6:55745800-55749200	Enhancers	Hela-S3	cervix
3	chr6:55746800-55749800	Enhancers	HUVEC	blood vessel
4	chr6:55747400-55749200	Enhancers	Pancreatic Islets	Pancreatic Islet
5	chr6:55748400-55749600	Weak transcription	Fetal Lung	lung
6	chr6:55748400-55750200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:55748600-55749200	Enhancers	A549	lung
8	chr6:55748600-55749600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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