Variant report

Variant	rs16887869
Chromosome Location	chr5:57429987-57429988
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:57427444..57430243-chr5:57435824..57437920,2	MCF-7	breast:
2	chr5:57429951..57431867-chr5:57754468..57758513,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000145632	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs56170564	1.00[AMR][1000 genomes]
rs73757711	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033051	chr5:57380218-57471801	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57424000-57430000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr5:57425000-57430200	Weak transcription	Fetal Muscle Trunk	muscle
3	chr5:57426600-57432600	Enhancers	HSMMtube	muscle
4	chr5:57426800-57430000	Weak transcription	Pancreas	Pancrea
5	chr5:57429000-57430200	Enhancers	Pancreatic Islets	Pancreatic Islet
6	chr5:57429000-57430400	Enhancers	Skeletal Muscle Male	skeletal muscle
7	chr5:57429000-57430600	Enhancers	Brain Germinal Matrix	brain
8	chr5:57429000-57432600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr5:57429000-57432600	Enhancers	NHLF	lung
10	chr5:57429000-57433400	Enhancers	Fetal Muscle Leg	muscle
11	chr5:57429200-57430400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr5:57429200-57430400	Enhancers	Fetal Heart	heart
13	chr5:57429200-57430400	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr5:57429200-57430400	Enhancers	Stomach Mucosa	stomach
15	chr5:57429200-57430600	Enhancers	Fetal Stomach	stomach
16	chr5:57429200-57430600	Enhancers	Rectal Mucosa Donor 31	rectum
17	chr5:57429200-57430600	Enhancers	HMEC	breast
18	chr5:57429200-57430800	Enhancers	Fetal Brain Female	brain
19	chr5:57429200-57430800	Enhancers	Ovary	ovary
20	chr5:57429200-57431400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr5:57429200-57432600	Enhancers	Muscle Satellite Cultured Cells	--
22	chr5:57429200-57432600	Enhancers	HSMM	muscle
23	chr5:57429200-57432600	Enhancers	Osteobl	bone
24	chr5:57429400-57430200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr5:57429400-57430200	Enhancers	Adipose Nuclei	Adipose
26	chr5:57429400-57430400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr5:57429400-57430400	Enhancers	Cortex derived primary cultured neurospheres	brain
28	chr5:57429400-57430400	Enhancers	Duodenum Smooth Muscle	Duodenum
29	chr5:57429400-57430400	Flanking Active TSS	Fetal Brain Male	brain
30	chr5:57429400-57430400	Flanking Active TSS	A549	lung
31	chr5:57429400-57430400	Enhancers	HUVEC	blood vessel
32	chr5:57429400-57430600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr5:57429400-57430600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr5:57429400-57430600	Enhancers	Sigmoid Colon	Sigmoid Colon
35	chr5:57429400-57432600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr5:57429400-57432600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr5:57429600-57430000	Enhancers	Colon Smooth Muscle	Colon
38	chr5:57429600-57430000	Enhancers	Rectal Smooth Muscle	rectum
39	chr5:57429600-57430000	Enhancers	NHDF-Ad	bronchial
40	chr5:57429600-57430200	Enhancers	Hela-S3	cervix
41	chr5:57429600-57430400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr5:57429600-57430400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr5:57429600-57430800	Enhancers	Fetal Lung	lung
44	chr5:57429800-57430000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr5:57429800-57430400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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