Variant report
| Variant | rs168883 |
|---|---|
| Chromosome Location | chr5:59178751-59178752 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:37)
| rs_ID | r2[population] |
|---|---|
| rs1008709 | 0.88[CHB][hapmap] |
| rs1027747 | 1.00[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs10940649 | 0.88[CHB][hapmap] |
| rs1120533 | 0.93[CHB][hapmap];0.88[ASN][1000 genomes] |
| rs11951422 | 0.87[CHB][hapmap];0.88[ASN][1000 genomes] |
| rs11956684 | 0.87[CHB][hapmap];0.90[ASN][1000 genomes] |
| rs12523468 | 0.87[CHB][hapmap] |
| rs13168347 | 0.81[ASN][1000 genomes] |
| rs13173398 | 0.87[CHB][hapmap] |
| rs159613 | 0.87[ASN][1000 genomes] |
| rs159617 | 0.85[ASN][1000 genomes] |
| rs17310599 | 0.88[CHB][hapmap] |
| rs17311853 | 0.88[CHB][hapmap] |
| rs17311925 | 0.88[CHB][hapmap];0.81[ASN][1000 genomes] |
| rs17371174 | 0.87[CHB][hapmap];0.81[ASN][1000 genomes] |
| rs17830249 | 0.88[CHB][hapmap] |
| rs2067024 | 0.88[CHB][hapmap];0.90[ASN][1000 genomes] |
| rs2898247 | 0.88[CHB][hapmap] |
| rs2938780 | 0.87[CHB][hapmap] |
| rs2938783 | 0.94[CHB][hapmap];0.89[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs2938786 | 0.86[CHB][hapmap] |
| rs2962200 | 0.84[ASN][1000 genomes] |
| rs2963817 | 0.88[CHB][hapmap] |
| rs2963818 | 0.87[CHB][hapmap] |
| rs2963821 | 0.88[CHB][hapmap] |
| rs2963822 | 0.82[ASN][1000 genomes] |
| rs2963826 | 0.87[CHB][hapmap] |
| rs4700342 | 0.81[ASN][1000 genomes] |
| rs60204066 | 0.92[ASN][1000 genomes] |
| rs661576 | 1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72751293 | 0.91[ASN][1000 genomes] |
| rs72751296 | 0.94[ASN][1000 genomes] |
| rs72751298 | 0.94[ASN][1000 genomes] |
| rs7703963 | 0.87[CHB][hapmap];0.81[ASN][1000 genomes] |
| rs7718249 | 0.90[ASN][1000 genomes] |
| rs7730821 | 0.88[CHB][hapmap];0.88[ASN][1000 genomes] |
| rs986400 | 0.87[CHB][hapmap];0.88[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1018015 | chr5:58889470-59532667 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 13 gene(s) | inside rSNPs | diseases |
| 2 | nsv537766 | chr5:58889470-59532667 | Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 13 gene(s) | inside rSNPs | diseases |
| 3 | nsv534614 | chr5:58962510-59388525 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 12 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:59160800-59189000 | Weak transcription | Aorta | Aorta |
| 2 | chr5:59176200-59182200 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
| 3 | chr5:59177800-59183200 | Weak transcription | Pancreatic Islets | Pancreatic Islet |
