Variant report
| Variant | rs1688854 |
|---|---|
| Chromosome Location | chr12:42518328-42518329 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:42471800-42524400 | Weak transcription | Esophagus | oesophagus |
| 2 | chr12:42474600-42518800 | Weak transcription | Brain Anterior Caudate | brain |
| 3 | chr12:42476000-42524400 | Weak transcription | Gastric | stomach |
| 4 | chr12:42476200-42524400 | Weak transcription | Pancreas | Pancrea |
| 5 | chr12:42476600-42523800 | Weak transcription | Hela-S3 | cervix |
| 6 | chr12:42484400-42524800 | Weak transcription | Right Ventricle | heart |
| 7 | chr12:42488600-42518600 | Weak transcription | Fetal Brain Male | brain |
| 8 | chr12:42492200-42518600 | Weak transcription | K562 | blood |
| 9 | chr12:42493000-42524400 | Weak transcription | Brain Substantia Nigra | brain |
| 10 | chr12:42493000-42534400 | Weak transcription | Primary T helper memory cells from peripheral blood 2 | blood |
| 11 | chr12:42493200-42518400 | Weak transcription | Primary T helper memory cells from peripheral blood 1 | blood |
| 12 | chr12:42493200-42519200 | Weak transcription | Primary T killer naive cells fromperipheralblood | blood |
| 13 | chr12:42497200-42518800 | Weak transcription | Psoas Muscle | Psoas |
| 14 | chr12:42499400-42518800 | Weak transcription | Fetal Kidney | kidney |
| 15 | chr12:42501000-42518800 | Weak transcription | Colon Smooth Muscle | Colon |
| 16 | chr12:42505800-42518400 | Weak transcription | Fetal Intestine Small | intestine |
| 17 | chr12:42505800-42518800 | Weak transcription | H1 Cell Line | embryonic stem cell |
| 18 | chr12:42505800-42518800 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
| 19 | chr12:42505800-42518800 | Weak transcription | Ganglion Eminence derived primary cultured neurospheres | brain |
| 20 | chr12:42505800-42522400 | Weak transcription | H1 Derived Mesenchymal Stem Cells | ES cell derived |
| 21 | chr12:42505800-42537000 | Weak transcription | Fetal Stomach | stomach |
| 22 | chr12:42505800-42537000 | Weak transcription | Lung | lung |
| 23 | chr12:42508400-42524600 | Weak transcription | Fetal Adrenal Gland | Adrenal Gland |
| 24 | chr12:42509600-42519400 | Weak transcription | Fetal Muscle Leg | muscle |
| 25 | chr12:42509800-42518600 | Weak transcription | H9 Cell Line | embryonic stem cell |
| 26 | chr12:42509800-42518800 | Weak transcription | Brain Germinal Matrix | brain |
| 27 | chr12:42510000-42518800 | Weak transcription | Brain Dorsolateral Prefrontal Cortex | brain |
| 28 | chr12:42511000-42518800 | Weak transcription | Brain Inferior Temporal Lobe | brain |
| 29 | chr12:42511200-42519000 | Weak transcription | Brain Cingulate Gyrus | brain |
| 30 | chr12:42511600-42518800 | Weak transcription | NHEK | skin |
| 31 | chr12:42511800-42518600 | Weak transcription | Primary T killer memory cells from peripheral blood | blood |
| 32 | chr12:42511800-42518800 | Weak transcription | Primary T regulatory cells fromperipheralblood | blood |
| 33 | chr12:42511800-42518800 | Weak transcription | Brain Hippocampus Middle | brain |
| 34 | chr12:42511800-42518800 | Weak transcription | Rectal Mucosa Donor 31 | rectum |
| 35 | chr12:42512000-42519000 | Weak transcription | Rectal Mucosa Donor 29 | rectum |
| 36 | chr12:42512000-42522200 | Weak transcription | HMEC | breast |
| 37 | chr12:42512000-42537400 | Weak transcription | Ovary | ovary |
| 38 | chr12:42512400-42519000 | Weak transcription | Primary B cells from cord blood | blood |
| 39 | chr12:42512400-42520800 | Weak transcription | Primary T helper cells PMA-I stimulated | -- |
| 40 | chr12:42512400-42521800 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
| 41 | chr12:42512400-42523800 | Weak transcription | Rectal Smooth Muscle | rectum |
| 42 | chr12:42512400-42523800 | Weak transcription | HSMM | muscle |
| 43 | chr12:42512400-42537000 | Weak transcription | Placenta | Placenta |
| 44 | chr12:42512600-42518400 | Weak transcription | Fetal Intestine Large | intestine |
| 45 | chr12:42512600-42518600 | Weak transcription | HUES6 Cell Line | embryonic stem cell |
| 46 | chr12:42512600-42518600 | Weak transcription | iPS-18 Cell Line | embryonic stem cell |
| 47 | chr12:42512600-42518600 | Weak transcription | Primary B cells from peripheral blood | blood |
| 48 | chr12:42512600-42518600 | Weak transcription | GM12878-XiMat | blood |
| 49 | chr12:42512600-42518800 | Weak transcription | Foreskin Keratinocyte Primary Cells skin03 | Skin |
| 50 | chr12:42512600-42518800 | Weak transcription | Fetal Lung | lung |
