Variant report

Variant	rs16889010
Chromosome Location	chr6:24286889-24286890
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs16888895	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16889000	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16889018	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4305716	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4631272	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7746747	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029930	chr6:23481989-24289948	Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv427746	chr6:24221299-24305709	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24284000-24287000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr6:24284000-24288400	Weak transcription	Spleen	Spleen
3	chr6:24284200-24292000	Weak transcription	Fetal Intestine Large	intestine
4	chr6:24284200-24294200	Weak transcription	Fetal Intestine Small	intestine
5	chr6:24284600-24287000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr6:24284600-24292000	Weak transcription	A549	lung
7	chr6:24284600-24302800	Weak transcription	Pancreas	Pancrea
8	chr6:24285000-24287800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr6:24286600-24287800	Strong transcription	Fetal Kidney	kidney
10	chr6:24286800-24288200	Genic enhancers	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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