Variant report

Variant	rs7746747
Chromosome Location	chr6:24375817-24375818
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs16888895	0.83[EUR][1000 genomes]
rs16889000	0.83[EUR][1000 genomes]
rs16889010	0.83[EUR][1000 genomes]
rs16889018	0.83[EUR][1000 genomes]
rs1772253	0.85[YRI][hapmap]
rs2793422	0.85[YRI][hapmap]
rs34046873	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4305716	0.83[EUR][1000 genomes]
rs4631272	0.83[EUR][1000 genomes]
rs57815612	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6910514	1.00[CEU][hapmap]
rs6918993	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs7760171	1.00[CEU][hapmap]
rs793654	0.85[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026638	chr6:24347972-24475300	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24363400-24376200	Weak transcription	HepG2	liver
2	chr6:24372800-24381600	Weak transcription	Fetal Intestine Small	intestine
3	chr6:24375200-24376400	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr6:24375400-24376400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr6:24375400-24376400	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr6:24375600-24376400	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr6:24375600-24376600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr6:24375600-24376600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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