Variant report

Variant	rs16889037
Chromosome Location	chr8:117878638-117878639
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:117862463..117865203-chr8:117877593..117879103,2	K562	blood:

Variant related genes	Relation type
ENSG00000164754	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10094803	1.00[EUR][1000 genomes]
rs10282816	1.00[EUR][1000 genomes]
rs10283144	1.00[EUR][1000 genomes]
rs10283150	1.00[EUR][1000 genomes]
rs11990712	1.00[EUR][1000 genomes]
rs12543129	1.00[EUR][1000 genomes]
rs12548895	1.00[EUR][1000 genomes]
rs1348797	1.00[EUR][1000 genomes]
rs14795	1.00[EUR][1000 genomes]
rs16888925	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16888945	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16889007	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16889074	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16889209	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16889218	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16889220	1.00[EUR][1000 genomes]
rs16889226	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17435846	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17435860	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1838839	1.00[EUR][1000 genomes]
rs2241981	1.00[EUR][1000 genomes]
rs2241982	1.00[EUR][1000 genomes]
rs2289937	1.00[EUR][1000 genomes]
rs28462971	1.00[EUR][1000 genomes]
rs2921771	1.00[EUR][1000 genomes]
rs2921782	1.00[EUR][1000 genomes]
rs2921783	1.00[EUR][1000 genomes]
rs2921784	1.00[EUR][1000 genomes]
rs2921785	1.00[EUR][1000 genomes]
rs2921787	1.00[EUR][1000 genomes]
rs2921788	1.00[EUR][1000 genomes]
rs2921790	1.00[EUR][1000 genomes]
rs3020111	1.00[EUR][1000 genomes]
rs3020125	1.00[EUR][1000 genomes]
rs3020128	1.00[EUR][1000 genomes]
rs3020130	1.00[EUR][1000 genomes]
rs3020131	1.00[EUR][1000 genomes]
rs3020133	1.00[EUR][1000 genomes]
rs3020135	1.00[EUR][1000 genomes]
rs3020138	1.00[EUR][1000 genomes]
rs3020139	1.00[EUR][1000 genomes]
rs3020181	1.00[EUR][1000 genomes]
rs55952416	1.00[EUR][1000 genomes]
rs56095633	1.00[EUR][1000 genomes]
rs57202151	1.00[EUR][1000 genomes]
rs6469664	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6993568	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7820245	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7831930	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7836088	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530386	chr8:117509968-118391406	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv831434	chr8:117784467-117977825	Flanking Active TSS Genic enhancers Weak transcription Enhancers Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	esv3366232	chr8:117875403-117878954	Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:117853000-117881400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:117856400-117879000	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr8:117856400-117882000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr8:117856800-117878800	Strong transcription	Fetal Thymus	thymus
5	chr8:117857000-117879200	Strong transcription	Hela-S3	cervix
6	chr8:117858000-117879000	Strong transcription	Primary B cells from peripheral blood	blood
7	chr8:117859600-117883800	Weak transcription	Stomach Mucosa	stomach
8	chr8:117860400-117885800	Weak transcription	Esophagus	oesophagus
9	chr8:117864400-117882400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr8:117864400-117885800	Weak transcription	Gastric	stomach
11	chr8:117864800-117884000	Weak transcription	Right Ventricle	heart
12	chr8:117865200-117882400	Weak transcription	Lung	lung
13	chr8:117865200-117885800	Weak transcription	Pancreas	Pancrea
14	chr8:117865600-117881600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr8:117865600-117885800	Weak transcription	Spleen	Spleen
16	chr8:117867000-117885200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr8:117867000-117885600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr8:117868600-117881000	Weak transcription	Fetal Brain Male	brain
19	chr8:117869800-117878800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr8:117870000-117884400	Weak transcription	Colonic Mucosa	Colon
21	chr8:117870200-117884800	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr8:117872600-117884400	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr8:117873000-117879400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr8:117873000-117882600	Weak transcription	Fetal Kidney	kidney
25	chr8:117873800-117883000	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr8:117875000-117879000	Genic enhancers	Primary T helper cells PMA-I stimulated	--
27	chr8:117875200-117879000	Genic enhancers	Primary T helper cells fromperipheralblood	blood
28	chr8:117875200-117880400	Enhancers	Pancreatic Islets	Pancreatic Islet
29	chr8:117876000-117878800	Weak transcription	Osteobl	bone
30	chr8:117876000-117880200	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr8:117876000-117881400	Weak transcription	NHLF	lung
32	chr8:117876000-117882400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr8:117876000-117884600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
34	chr8:117876200-117879000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr8:117876200-117879400	Weak transcription	Fetal Brain Female	brain
36	chr8:117876200-117881000	Weak transcription	Thymus	Thymus
37	chr8:117876200-117881400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr8:117876200-117881400	Weak transcription	Left Ventricle	heart
39	chr8:117876200-117881600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr8:117876200-117882800	Weak transcription	NH-A	brain
41	chr8:117876200-117883200	Weak transcription	Fetal Intestine Large	intestine
42	chr8:117876800-117878800	Genic enhancers	HUES64 Cell Line	embryonic stem cell
43	chr8:117876800-117879200	Enhancers	Primary T helper naive cells from peripheral blood	blood
44	chr8:117877000-117878800	Enhancers	Rectal Smooth Muscle	rectum
45	chr8:117877000-117879000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr8:117877000-117879000	Enhancers	Brain Inferior Temporal Lobe	brain
47	chr8:117877000-117879000	Enhancers	Brain Substantia Nigra	brain
48	chr8:117877000-117879400	Enhancers	Adipose Nuclei	Adipose
49	chr8:117877000-117879600	Enhancers	Liver	Liver
50	chr8:117877000-117879800	Enhancers	Rectal Mucosa Donor 31	rectum

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