Variant report

Variant	rs16889284
Chromosome Location	chr8:117951092-117951093
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:117950738..117952967-chr8:117961250..117964498,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164756	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs16888873	1.00[MEX][hapmap]
rs16889103	1.00[MEX][hapmap]
rs16889160	1.00[MEX][hapmap]
rs16889303	1.00[MEX][hapmap]
rs7826859	1.00[MEX][hapmap]
rs7843159	1.00[MEX][hapmap]
rs7844000	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530386	chr8:117509968-118391406	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv831434	chr8:117784467-117977825	Flanking Active TSS Genic enhancers Weak transcription Enhancers Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv891409	chr8:117948986-117972064	Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:117949600-117951200	Active TSS	Colon Smooth Muscle	Colon
2	chr8:117949800-117951200	Active TSS	Pancreatic Islets	Pancreatic Islet
3	chr8:117949800-117951200	Active TSS	Rectal Smooth Muscle	rectum
4	chr8:117949800-117951400	Active TSS	ES-I3 Cell Line	embryonic stem cell
5	chr8:117949800-117951400	Active TSS	H1 Cell Line	embryonic stem cell
6	chr8:117949800-117951400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr8:117949800-117951400	Active TSS	Stomach Smooth Muscle	stomach
8	chr8:117950000-117951200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
9	chr8:117950000-117951200	Active TSS	H9 Cell Line	embryonic stem cell
10	chr8:117950000-117951200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr8:117950000-117951200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr8:117950000-117951200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr8:117950000-117951200	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr8:117950000-117951200	Bivalent Enhancer	Primary B cells from peripheral blood	blood
15	chr8:117950000-117951200	Active TSS	Fetal Kidney	kidney
16	chr8:117950000-117951200	Active TSS	HMEC	breast
17	chr8:117950000-117951200	Active TSS	NH-A	brain
18	chr8:117950000-117951400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr8:117950000-117951400	Active TSS	HUES64 Cell Line	embryonic stem cell
20	chr8:117950000-117951400	Active TSS	iPS-20b Cell Line	embryonic stem cell
21	chr8:117950000-117952000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr8:117950200-117951200	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr8:117950200-117951200	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr8:117950200-117951200	Active TSS	HUES6 Cell Line	embryonic stem cell
25	chr8:117950200-117951200	Bivalent/Poised TSS	Primary T regulatory cells fromperipheralblood	blood
26	chr8:117950200-117951200	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr8:117950200-117951200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr8:117950200-117951200	Active TSS	Duodenum Mucosa	Duodenum
29	chr8:117950200-117951200	Bivalent/Poised TSS	Fetal Brain Female	brain
30	chr8:117950200-117951200	Active TSS	Rectal Mucosa Donor 29	rectum
31	chr8:117950200-117951400	Active TSS	HUES48 Cell Line	embryonic stem cell
32	chr8:117950200-117951400	Active TSS	iPS-15b Cell Line	embryonic stem cell
33	chr8:117950200-117951400	Active TSS	iPS-18 Cell Line	embryonic stem cell
34	chr8:117950200-117951400	Active TSS	Breast Myoepithelial Primary Cells	Breast
35	chr8:117950400-117951200	Bivalent/Poised TSS	Primary T helper naive cells fromperipheralblood	blood
36	chr8:117950400-117951200	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr8:117950400-117951200	Active TSS	Brain Angular Gyrus	brain
38	chr8:117950400-117951200	Active TSS	Brain Anterior Caudate	brain
39	chr8:117950400-117951200	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
40	chr8:117950400-117951200	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
41	chr8:117950400-117951200	Bivalent/Poised TSS	Fetal Intestine Small	intestine
42	chr8:117950400-117951200	Bivalent/Poised TSS	Fetal Muscle Leg	muscle
43	chr8:117950400-117951200	Active TSS	Placenta Amnion	Placenta Amnion
44	chr8:117950400-117951200	Bivalent/Poised TSS	A549	lung
45	chr8:117950400-117951200	Bivalent/Poised TSS	HSMM	muscle
46	chr8:117950600-117951200	Bivalent Enhancer	Primary hematopoietic stem cells	blood
47	chr8:117950600-117951200	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr8:117950600-117951200	Bivalent/Poised TSS	Fetal Muscle Trunk	muscle
49	chr8:117950800-117951200	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
50	chr8:117950800-117951200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells short term culture	blood

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