Variant report

Variant	rs16889303
Chromosome Location	chr8:117959213-117959214
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs16888873	1.00[MEX][hapmap]
rs16889103	1.00[MEX][hapmap]
rs16889160	1.00[MEX][hapmap]
rs16889284	1.00[MEX][hapmap]
rs7826859	1.00[MEX][hapmap]
rs7843159	1.00[MEX][hapmap]
rs7844000	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530386	chr8:117509968-118391406	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv831434	chr8:117784467-117977825	Flanking Active TSS Genic enhancers Weak transcription Enhancers Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv891409	chr8:117948986-117972064	Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs16889303	RAB31	trans	lymphoblastoid	seeQTL

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:117951200-117962000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:117957200-117961200	Enhancers	Colon Smooth Muscle	Colon
3	chr8:117957400-117959400	Enhancers	Brain Germinal Matrix	brain
4	chr8:117957600-117960400	Enhancers	Fetal Muscle Leg	muscle
5	chr8:117957800-117960000	Weak transcription	Pancreas	Pancrea
6	chr8:117958800-117959400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr8:117958800-117959400	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr8:117958800-117959800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr8:117958800-117960000	Weak transcription	Fetal Muscle Trunk	muscle
10	chr8:117958800-117960000	Weak transcription	Psoas Muscle	Psoas
11	chr8:117958800-117960000	Enhancers	Stomach Smooth Muscle	stomach
12	chr8:117959200-117962000	Weak transcription	Pancreatic Islets	Pancreatic Islet

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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