Variant report

Variant	rs16889474
Chromosome Location	chr6:24556324-24556325
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs2076315	1.00[JPT][hapmap]
rs2744605	1.00[JPT][hapmap];0.83[YRI][hapmap]
rs2760181	1.00[JPT][hapmap]
rs2760182	0.83[YRI][hapmap]
rs2760183	1.00[JPT][hapmap]
rs2760184	1.00[JPT][hapmap]
rs59625418	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60960308	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73388225	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73388230	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73388241	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73388251	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7758607	1.00[JPT][hapmap];0.89[YRI][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34020	chr6:24481299-24606036	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24496200-24583000	Weak transcription	Hela-S3	cervix
2	chr6:24535200-24566600	Weak transcription	Brain Germinal Matrix	brain
3	chr6:24535200-24591200	Weak transcription	Fetal Brain Male	brain
4	chr6:24535600-24560600	Weak transcription	Brain Anterior Caudate	brain
5	chr6:24535600-24560600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr6:24535600-24563200	Weak transcription	Brain Angular Gyrus	brain
7	chr6:24535600-24583400	Weak transcription	Brain Cingulate Gyrus	brain
8	chr6:24539200-24583200	Weak transcription	Fetal Intestine Small	intestine
9	chr6:24548400-24583400	Weak transcription	A549	lung
10	chr6:24550200-24566400	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr6:24552600-24568800	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr6:24554600-24563600	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr6:24556200-24556600	Enhancers	Fetal Brain Female	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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