Variant report

Variant	rs2760181
Chromosome Location	chr6:24548561-24548562
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:24546115..24547618-chr6:24548404..24550635,2	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs16889474	1.00[JPT][hapmap]
rs17311358	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs17376614	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs2076315	1.00[JPT][hapmap]
rs2744605	0.91[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2760182	0.91[ASW][hapmap];0.83[LWK][hapmap];0.95[MKK][hapmap];0.83[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2760183	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2760184	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2817243	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41271789	0.81[EUR][1000 genomes]
rs4646829	0.83[ASN][1000 genomes]
rs56955985	0.83[ASN][1000 genomes]
rs58775285	0.83[ASN][1000 genomes]
rs6925068	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6925171	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73386193	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73728140	1.00[ASN][1000 genomes]
rs7758607	1.00[JPT][hapmap]
rs9461019	0.83[ASN][1000 genomes]
rs9461026	0.83[ASN][1000 genomes]
rs9467177	0.83[ASN][1000 genomes]
rs9467179	0.83[ASN][1000 genomes]
rs9467181	0.83[ASN][1000 genomes]
rs9467185	0.83[ASN][1000 genomes]
rs9467186	0.83[ASN][1000 genomes]
rs9467187	0.83[ASN][1000 genomes]
rs9467189	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34020	chr6:24481299-24606036	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24496200-24583000	Weak transcription	Hela-S3	cervix
2	chr6:24535200-24566600	Weak transcription	Brain Germinal Matrix	brain
3	chr6:24535200-24591200	Weak transcription	Fetal Brain Male	brain
4	chr6:24535400-24550000	Weak transcription	Gastric	stomach
5	chr6:24535600-24560600	Weak transcription	Brain Anterior Caudate	brain
6	chr6:24535600-24560600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr6:24535600-24563200	Weak transcription	Brain Angular Gyrus	brain
8	chr6:24535600-24583400	Weak transcription	Brain Cingulate Gyrus	brain
9	chr6:24539200-24583200	Weak transcription	Fetal Intestine Small	intestine
10	chr6:24540200-24556200	Weak transcription	Fetal Brain Female	brain
11	chr6:24548200-24548600	Enhancers	Dnd41	blood
12	chr6:24548400-24583400	Weak transcription	A549	lung

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