Variant report

Variant	rs6925171
Chromosome Location	chr6:24539107-24539108
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs17376614	0.81[EUR][1000 genomes]
rs2744605	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2760181	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2760182	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2760183	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2760184	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2817243	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41271789	0.89[EUR][1000 genomes]
rs4646829	0.83[ASN][1000 genomes]
rs56955985	0.83[ASN][1000 genomes]
rs58775285	0.83[ASN][1000 genomes]
rs6925068	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73386193	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73728140	1.00[ASN][1000 genomes]
rs9461019	0.83[ASN][1000 genomes]
rs9461026	0.83[ASN][1000 genomes]
rs9467177	0.83[ASN][1000 genomes]
rs9467179	0.83[ASN][1000 genomes]
rs9467181	0.83[ASN][1000 genomes]
rs9467185	0.83[ASN][1000 genomes]
rs9467186	0.83[ASN][1000 genomes]
rs9467187	0.83[ASN][1000 genomes]
rs9467189	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34020	chr6:24481299-24606036	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24496200-24583000	Weak transcription	Hela-S3	cervix
2	chr6:24507800-24539200	Weak transcription	Brain Hippocampus Middle	brain
3	chr6:24509400-24545800	Weak transcription	Small Intestine	intestine
4	chr6:24528400-24540800	Strong transcription	Liver	Liver
5	chr6:24530000-24540800	Strong transcription	Thymus	Thymus
6	chr6:24530200-24540800	Strong transcription	Fetal Thymus	thymus
7	chr6:24532200-24545000	Weak transcription	K562	blood
8	chr6:24534800-24539400	Weak transcription	Fetal Brain Female	brain
9	chr6:24534800-24540000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr6:24534800-24542400	Weak transcription	Fetal Kidney	kidney
11	chr6:24535000-24542200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr6:24535000-24546200	Weak transcription	Pancreas	Pancrea
13	chr6:24535000-24547400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr6:24535200-24539200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr6:24535200-24566600	Weak transcription	Brain Germinal Matrix	brain
16	chr6:24535200-24591200	Weak transcription	Fetal Brain Male	brain
17	chr6:24535400-24539800	Weak transcription	Primary hematopoietic stem cells	blood
18	chr6:24535400-24550000	Weak transcription	Gastric	stomach
19	chr6:24535600-24539400	Weak transcription	Left Ventricle	heart
20	chr6:24535600-24539400	Weak transcription	Ovary	ovary
21	chr6:24535600-24540400	Weak transcription	Fetal Intestine Large	intestine
22	chr6:24535600-24540400	Weak transcription	Lung	lung
23	chr6:24535600-24542400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr6:24535600-24542400	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr6:24535600-24543400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr6:24535600-24544000	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr6:24535600-24546000	Weak transcription	Fetal Muscle Leg	muscle
28	chr6:24535600-24546800	Weak transcription	Dnd41	blood
29	chr6:24535600-24547400	Weak transcription	Primary T helper cells fromperipheralblood	blood
30	chr6:24535600-24560600	Weak transcription	Brain Anterior Caudate	brain
31	chr6:24535600-24560600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr6:24535600-24563200	Weak transcription	Brain Angular Gyrus	brain
33	chr6:24535600-24583400	Weak transcription	Brain Cingulate Gyrus	brain
34	chr6:24535800-24541600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr6:24536000-24539600	Weak transcription	Fetal Stomach	stomach
36	chr6:24536000-24543800	Weak transcription	Primary T cells from cord blood	blood
37	chr6:24537000-24545400	Weak transcription	Primary T cells fromperipheralblood	blood
38	chr6:24537000-24546200	Weak transcription	Fetal Heart	heart
39	chr6:24537600-24542200	Weak transcription	Adipose Nuclei	Adipose
40	chr6:24537800-24539400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr6:24538200-24539600	Weak transcription	Primary B cells from cord blood	blood
42	chr6:24538200-24539800	Weak transcription	Right Ventricle	heart
43	chr6:24538200-24542000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr6:24538200-24544200	Weak transcription	Skeletal Muscle Male	skeletal muscle
45	chr6:24538200-24544600	Weak transcription	Stomach Smooth Muscle	stomach
46	chr6:24538200-24545800	Weak transcription	Aorta	Aorta
47	chr6:24538200-24546000	Weak transcription	HepG2	liver
48	chr6:24538200-24547400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr6:24538400-24547400	Weak transcription	Primary B cells from peripheral blood	blood
50	chr6:24538600-24539200	Strong transcription	Fetal Intestine Small	intestine

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