Variant report

Variant	rs16889927
Chromosome Location	chr8:118605547-118605548
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10505316	1.00[AMR][1000 genomes]
rs16889972	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16889975	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73704110	1.00[AMR][1000 genomes]
rs73704114	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73704115	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73704116	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs899685	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019636	chr8:118598433-118946091	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv539734	chr8:118598433-118946091	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1028387	chr8:118602105-118640162	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:118591600-118615000	Weak transcription	Aorta	Aorta
2	chr8:118603800-118606200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr8:118604000-118606200	Enhancers	NHDF-Ad	bronchial
4	chr8:118604000-118606400	Enhancers	HSMM	muscle
5	chr8:118604200-118606200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr8:118604200-118606200	Enhancers	Osteobl	bone
7	chr8:118604400-118605800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr8:118604400-118605800	Enhancers	Muscle Satellite Cultured Cells	--
9	chr8:118604400-118606000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr8:118604400-118606000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr8:118604400-118606200	Enhancers	HSMMtube	muscle
12	chr8:118604600-118605800	Enhancers	NHLF	lung
13	chr8:118604600-118606200	Enhancers	Brain Hippocampus Middle	brain
14	chr8:118604600-118606800	Enhancers	NH-A	brain
15	chr8:118604800-118606000	Enhancers	Brain Cingulate Gyrus	brain
16	chr8:118604800-118606200	Enhancers	Brain Inferior Temporal Lobe	brain
17	chr8:118605200-118606000	Enhancers	Brain Substantia Nigra	brain
18	chr8:118605200-118606200	Enhancers	Brain Anterior Caudate	brain
19	chr8:118605400-118606200	Enhancers	Liver	Liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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