Variant report

Variant	rs16889975
Chromosome Location	chr8:118615358-118615359
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10505316	1.00[AMR][1000 genomes]
rs16889927	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16889972	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs62521244	0.80[AFR][1000 genomes]
rs73704110	1.00[AMR][1000 genomes]
rs73704114	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73704115	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73704116	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73704117	0.80[AFR][1000 genomes]
rs899685	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019636	chr8:118598433-118946091	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv539734	chr8:118598433-118946091	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1028387	chr8:118602105-118640162	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:118613000-118616200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr8:118613400-118615800	Enhancers	NHDF-Ad	bronchial
3	chr8:118613800-118616000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr8:118614200-118615400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr8:118614200-118616200	Enhancers	HSMM	muscle
6	chr8:118614200-118616400	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr8:118614400-118615600	Enhancers	HMEC	breast
8	chr8:118614400-118615800	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr8:118614600-118615400	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr8:118614600-118615400	Enhancers	Fetal Kidney	kidney
11	chr8:118614600-118615600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr8:118614600-118615800	Enhancers	H1 Cell Line	embryonic stem cell
13	chr8:118614600-118616000	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr8:118614600-118616000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr8:118614600-118616200	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr8:118614600-118616200	Enhancers	Ovary	ovary
17	chr8:118614600-118616200	Enhancers	HSMMtube	muscle
18	chr8:118614800-118615400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr8:118614800-118615400	Enhancers	Hela-S3	cervix
20	chr8:118614800-118615600	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr8:118614800-118615600	Enhancers	iPS-15b Cell Line	embryonic stem cell
22	chr8:118614800-118615600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr8:118614800-118615600	Flanking Active TSS	HUVEC	blood vessel
24	chr8:118615000-118615600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr8:118615000-118615600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr8:118615000-118615600	Active TSS	Aorta	Aorta
27	chr8:118615000-118615800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr8:118615000-118615800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
29	chr8:118615200-118615400	Flanking Active TSS	Adipose Nuclei	Adipose
30	chr8:118615200-118615400	Active TSS	Fetal Lung	lung
31	chr8:118615200-118615600	Active TSS	Stomach Smooth Muscle	stomach
32	chr8:118615200-118615600	Flanking Active TSS	NH-A	brain
33	chr8:118615200-118615600	Flanking Active TSS	Osteobl	bone
34	chr8:118615200-118615800	Flanking Active TSS	NHLF	lung

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