Variant report
| Variant | rs73704117 |
|---|---|
| Chromosome Location | chr8:118609010-118609011 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr16:1588593..1590276-chr8:118608646..118611182,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:17)
| rs_ID | r2[population] |
|---|---|
| rs11995038 | 1.00[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs16889972 | 0.80[AFR][1000 genomes] |
| rs16889975 | 0.80[AFR][1000 genomes] |
| rs62521192 | 0.85[EUR][1000 genomes] |
| rs62521196 | 0.85[EUR][1000 genomes] |
| rs62521201 | 0.85[EUR][1000 genomes] |
| rs62521202 | 0.85[EUR][1000 genomes] |
| rs62521205 | 0.85[EUR][1000 genomes] |
| rs62521211 | 0.85[EUR][1000 genomes] |
| rs62521237 | 0.85[EUR][1000 genomes] |
| rs62521238 | 0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62521239 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62521241 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62521242 | 1.00[EUR][1000 genomes] |
| rs62521244 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73704115 | 0.80[AFR][1000 genomes] |
| rs73704116 | 0.80[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1019636 | chr8:118598433-118946091 | Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | Chromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv539734 | chr8:118598433-118946091 | Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | Chromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv1028387 | chr8:118602105-118640162 | Weak transcription Enhancers Active TSS Flanking Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:118591600-118615000 | Weak transcription | Aorta | Aorta |
