Variant report

Variant	rs62521196
Chromosome Location	chr8:118525713-118525714
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11995038	1.00[EUR][1000 genomes]
rs17667932	0.81[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs17667990	0.86[ASN][1000 genomes]
rs62521192	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62521201	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62521202	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62521204	0.86[ASN][1000 genomes]
rs62521205	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62521211	1.00[EUR][1000 genomes]
rs62521230	0.85[EUR][1000 genomes]
rs62521237	1.00[EUR][1000 genomes]
rs62521238	1.00[EUR][1000 genomes]
rs62521239	0.85[EUR][1000 genomes]
rs62521241	0.85[EUR][1000 genomes]
rs62521242	0.85[EUR][1000 genomes]
rs6993408	0.81[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs72672126	0.90[ASN][1000 genomes]
rs72672136	0.81[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs73704117	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428525	chr8:118384428-118543349	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv831436	chr8:118384463-118543297	Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:118524200-118525800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
2	chr8:118525000-118527000	Weak transcription	Psoas Muscle	Psoas

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links