Variant report

Variant	rs62521239
Chromosome Location	chr8:118605187-118605188
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:118486547..118487132-chr8:118605065..118605925,2	MCF-7	breast:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11995038	0.85[EUR][1000 genomes]
rs62521192	0.85[EUR][1000 genomes]
rs62521196	0.85[EUR][1000 genomes]
rs62521201	0.85[EUR][1000 genomes]
rs62521202	0.85[EUR][1000 genomes]
rs62521205	0.85[EUR][1000 genomes]
rs62521211	0.85[EUR][1000 genomes]
rs62521237	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62521238	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62521241	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62521242	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62521244	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73704117	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019636	chr8:118598433-118946091	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv539734	chr8:118598433-118946091	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1028387	chr8:118602105-118640162	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:118591600-118615000	Weak transcription	Aorta	Aorta
2	chr8:118603800-118606200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr8:118604000-118606200	Enhancers	NHDF-Ad	bronchial
4	chr8:118604000-118606400	Enhancers	HSMM	muscle
5	chr8:118604200-118605400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr8:118604200-118606200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr8:118604200-118606200	Enhancers	Osteobl	bone
8	chr8:118604400-118605400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr8:118604400-118605400	Enhancers	Fetal Muscle Leg	muscle
10	chr8:118604400-118605800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr8:118604400-118605800	Enhancers	Muscle Satellite Cultured Cells	--
12	chr8:118604400-118606000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr8:118604400-118606000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr8:118604400-118606200	Enhancers	HSMMtube	muscle
15	chr8:118604600-118605400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr8:118604600-118605400	Enhancers	Fetal Muscle Trunk	muscle
17	chr8:118604600-118605800	Enhancers	NHLF	lung
18	chr8:118604600-118606200	Enhancers	Brain Hippocampus Middle	brain
19	chr8:118604600-118606800	Enhancers	NH-A	brain
20	chr8:118604800-118606000	Enhancers	Brain Cingulate Gyrus	brain
21	chr8:118604800-118606200	Enhancers	Brain Inferior Temporal Lobe	brain
22	chr8:118605000-118605400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr8:118605000-118605400	Enhancers	Skeletal Muscle Male	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links