Variant report

Variant	rs72672126
Chromosome Location	chr8:118531669-118531670
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs17667932	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17667990	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1844320	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56338103	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62521192	0.86[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs62521196	0.90[ASN][1000 genomes]
rs62521197	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62521201	0.90[ASN][1000 genomes]
rs62521202	0.86[ASN][1000 genomes]
rs62521204	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62521205	0.86[ASN][1000 genomes]
rs6993408	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72672136	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72672138	0.81[AMR][1000 genomes]
rs72672139	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428525	chr8:118384428-118543349	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv831436	chr8:118384463-118543297	Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:118527000-118532000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr8:118531200-118532400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
3	chr8:118531400-118532200	Enhancers	Primary T helper cells PMA-I stimulated	--
4	chr8:118531600-118531800	Enhancers	Primary T helper naive cells from peripheral blood	blood
5	chr8:118531600-118531800	Bivalent Enhancer	HepG2	liver
6	chr8:118531600-118532000	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
7	chr8:118531600-118532000	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr8:118531600-118532000	Enhancers	Dnd41	blood
9	chr8:118531600-118532400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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