Variant report

Variant	rs16890740
Chromosome Location	chr6:80163791-80163792
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:79785608..79789213-chr6:80161960..80164790,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000146247	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs16890745	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16890789	1.00[AFR][1000 genomes]
rs16890805	1.00[AFR][1000 genomes]
rs16890832	1.00[AFR][1000 genomes]
rs16890833	1.00[AFR][1000 genomes]
rs62411327	1.00[AFR][1000 genomes]
rs62411328	1.00[AFR][1000 genomes]
rs62411329	1.00[AFR][1000 genomes]
rs62411333	1.00[AFR][1000 genomes]
rs62411355	1.00[AFR][1000 genomes]
rs62411357	1.00[AFR][1000 genomes]
rs62413361	1.00[AFR][1000 genomes]
rs62413365	1.00[AFR][1000 genomes]
rs62413367	1.00[AFR][1000 genomes]
rs62413373	1.00[AFR][1000 genomes]
rs62413374	1.00[AFR][1000 genomes]
rs62413375	1.00[AFR][1000 genomes]
rs62413378	1.00[AFR][1000 genomes]
rs62413379	1.00[AFR][1000 genomes]
rs62413381	1.00[AFR][1000 genomes]
rs72903711	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028607	chr6:79853272-80767716	Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv886301	chr6:80111104-80339088	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv886302	chr6:80111104-80355973	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv1030126	chr6:80113449-80209165	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv1027388	chr6:80113449-80355973	ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
6	nsv830707	chr6:80134625-80325171	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
7	nsv1029259	chr6:80142754-80340332	Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
8	nsv886303	chr6:80147225-80252423	Active TSS Flanking Active TSS Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:80161800-80166400	Enhancers	Dnd41	blood
2	chr6:80162200-80166000	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr6:80162400-80164400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:80162600-80164000	Enhancers	Hela-S3	cervix
5	chr6:80162600-80164400	Enhancers	NHEK	skin
6	chr6:80162600-80165600	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr6:80163000-80164000	Enhancers	Adipose Nuclei	Adipose
8	chr6:80163000-80164000	Enhancers	Fetal Lung	lung
9	chr6:80163000-80164200	Enhancers	Muscle Satellite Cultured Cells	--
10	chr6:80163200-80163800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr6:80163200-80163800	Enhancers	Placenta	Placenta
12	chr6:80163200-80163800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
13	chr6:80163200-80164000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr6:80163200-80164000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr6:80163200-80164000	Enhancers	HSMMtube	muscle
16	chr6:80163200-80164000	Enhancers	Osteobl	bone
17	chr6:80163400-80163800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr6:80163400-80163800	Active TSS	HMEC	breast
19	chr6:80163600-80163800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr6:80163600-80164200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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