Variant report
| Variant | rs16891295 |
|---|---|
| Chromosome Location | chr6:38907291-38907292 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:38901008..38902530-chr6:38905671..38907488,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs10484848 | 0.80[CEU][hapmap] |
| rs10484849 | 0.80[CEU][hapmap] |
| rs10484851 | 0.80[CEU][hapmap] |
| rs10947769 | 0.80[CEU][hapmap] |
| rs10947773 | 0.89[CEU][hapmap] |
| rs10947774 | 0.80[CEU][hapmap] |
| rs10947775 | 0.80[CEU][hapmap] |
| rs12190209 | 0.80[CEU][hapmap] |
| rs12192920 | 0.80[CEU][hapmap] |
| rs12196393 | 0.80[CEU][hapmap] |
| rs12202648 | 0.80[CEU][hapmap] |
| rs12202878 | 0.80[CEU][hapmap] |
| rs12210777 | 0.80[CEU][hapmap] |
| rs12212950 | 0.80[CEU][hapmap] |
| rs12213273 | 0.88[CEU][hapmap] |
| rs1332016 | 0.80[CEU][hapmap] |
| rs1332017 | 0.89[CEU][hapmap] |
| rs2395711 | 0.80[CEU][hapmap] |
| rs41273114 | 0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7738586 | 0.80[CEU][hapmap] |
| rs9296267 | 1.00[CEU][hapmap];1.00[JPT][hapmap] |
| rs9470946 | 1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv885817 | chr6:38036420-39019503 | Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 26 gene(s) | inside rSNPs | diseases |
| 2 | nsv1028088 | chr6:38821047-39163549 | Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 10 gene(s) | inside rSNPs | diseases |
| 3 | nsv538205 | chr6:38821047-39163549 | Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 10 gene(s) | inside rSNPs | diseases |
| 4 | nsv885821 | chr6:38843970-39039503 | Bivalent Enhancer Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 5 | nsv602962 | chr6:38907202-38940282 | Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:38906800-38909800 | Weak transcription | Primary T regulatory cells fromperipheralblood | blood |
