Variant report

Variant	rs16892297
Chromosome Location	chr8:120283013-120283014
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:120278648..120281614-chr8:120282840..120285748,2	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10505354	0.93[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11990379	1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap]
rs11994152	1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap]
rs1364704	0.85[CHD][hapmap]
rs1364713	0.91[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1425068	1.00[CHD][hapmap]
rs16892237	0.85[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap]
rs16892267	0.93[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs16892306	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs16892318	0.87[ASN][1000 genomes]
rs2303398	1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap]
rs3739419	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs3812491	1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap]
rs41319147	1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap]
rs55636028	0.88[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs56398539	0.81[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs56840596	0.84[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs58857566	0.84[AMR][1000 genomes]
rs59656505	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59699923	0.82[AFR][1000 genomes]
rs60879825	0.85[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs73709684	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs73709685	0.93[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs73709688	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs73709690	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868916	chr8:119911943-120762250	Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1026655	chr8:120282929-120522329	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:120281800-120284000	Enhancers	HUES6 Cell Line	embryonic stem cell
2	chr8:120282400-120283800	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr8:120282400-120283800	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr8:120282800-120283200	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr8:120282800-120283800	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr8:120282800-120284400	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr8:120282800-120285000	Enhancers	iPS-15b Cell Line	embryonic stem cell

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