Variant report

Variant	rs16892318
Chromosome Location	chr8:120339417-120339418
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11989564	0.83[EUR][1000 genomes]
rs11992639	0.83[EUR][1000 genomes]
rs11996029	0.93[EUR][1000 genomes]
rs1364713	1.00[CHB][hapmap]
rs16892297	0.87[ASN][1000 genomes]
rs16892306	0.91[ASN][1000 genomes]
rs17787689	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs2470042	0.82[CHB][hapmap]
rs34920533	0.86[EUR][1000 genomes]
rs3739419	1.00[CHB][hapmap]
rs59656505	0.87[ASN][1000 genomes]
rs7011766	0.97[EUR][1000 genomes]
rs73709688	0.91[ASN][1000 genomes]
rs73709690	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868916	chr8:119911943-120762250	Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1026655	chr8:120282929-120522329	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
3	nsv891416	chr8:120295792-120353062	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region miRNA	n/a	inside rSNPs	diseases
4	nsv1032293	chr8:120311108-120389573	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region miRNA	n/a	inside rSNPs	diseases
5	nsv1019832	chr8:120327991-120380580	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region miRNA	n/a	inside rSNPs	diseases
6	nsv891417	chr8:120329940-120365319	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region miRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:120337600-120340200	Enhancers	HepG2	liver
2	chr8:120337800-120339600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr8:120338000-120341200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr8:120339400-120340200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr8:120339400-120340600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links