Variant report

Variant	rs16893242
Chromosome Location	chr8:130510068-130510069
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000266387	TF binding region
ENSG00000265513	TF binding region
ENSG00000264680	TF binding region
ENSG00000266096	TF binding region
ENSG00000265687	TF binding region
ENSG00000265219	TF binding region

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12677044	0.96[YRI][hapmap]
rs12681345	0.96[YRI][hapmap]
rs16904090	0.88[ASW][hapmap];0.84[CHD][hapmap];0.98[GIH][hapmap];0.85[LWK][hapmap];0.81[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap]
rs1897682	0.98[EUR][1000 genomes]
rs1897683	0.88[ASW][hapmap];0.95[GIH][hapmap];0.85[LWK][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs58145321	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72714272	0.84[EUR][1000 genomes]
rs973006	0.95[GIH][hapmap];0.86[MEX][hapmap];0.98[TSI][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1839602	chr8:130503150-130510068	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region miRNA	6 gene(s)	inside rSNPs	diseases
2	esv3374649	chr8:130507170-130510618	Weak transcription Strong transcription ZNF genes & repeats	TF binding region Chromatin interactive region miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130503600-130519600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:130507600-130516400	Weak transcription	Dnd41	blood
3	chr8:130507800-130510600	Weak transcription	K562	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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