Variant report

Variant	rs16893520
Chromosome Location	chr8:121093163-121093164
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10104973	0.91[YRI][hapmap]
rs16892894	0.95[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16893456	0.91[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16893464	0.86[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16893485	0.95[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60560198	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61424529	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7010834	0.95[YRI][hapmap];0.86[AFR][1000 genomes]
rs73704214	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73704220	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891418	chr8:120600965-121301474	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	esv3348294	chr8:121000288-121250984	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:121075600-121095800	Weak transcription	Gastric	stomach
2	chr8:121086000-121094400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr8:121089800-121093400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr8:121090400-121094400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr8:121091000-121094400	Weak transcription	Osteobl	bone
6	chr8:121091000-121094600	Weak transcription	Ovary	ovary
7	chr8:121091200-121095400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr8:121092200-121093400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr8:121092800-121093400	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr8:121093000-121093600	Weak transcription	Placenta	Placenta
11	chr8:121093000-121094600	Weak transcription	Primary hematopoietic stem cells	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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