Variant report

Variant	rs7010834
Chromosome Location	chr8:121104799-121104800
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10104973	0.90[LWK][hapmap];0.95[YRI][hapmap];0.86[AFR][1000 genomes]
rs16892894	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs16893456	0.86[YRI][hapmap]
rs16893464	0.93[ASW][hapmap];0.86[LWK][hapmap];0.81[MKK][hapmap];0.90[YRI][hapmap];0.83[AFR][1000 genomes]
rs16893485	0.95[YRI][hapmap];0.84[AFR][1000 genomes]
rs16893520	0.95[YRI][hapmap];0.86[AFR][1000 genomes]
rs16893537	0.81[YRI][hapmap];0.81[AFR][1000 genomes]
rs58252479	0.86[AFR][1000 genomes]
rs59258952	0.81[AFR][1000 genomes]
rs60163884	0.85[AFR][1000 genomes]
rs60560198	0.84[AFR][1000 genomes]
rs61179468	0.90[AFR][1000 genomes]
rs61396869	0.88[AFR][1000 genomes]
rs61424529	0.86[AFR][1000 genomes]
rs7016388	0.81[YRI][hapmap]
rs73704214	0.86[AFR][1000 genomes]
rs73704220	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891418	chr8:120600965-121301474	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	esv3348294	chr8:121000288-121250984	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1025923	chr8:121093383-121108706	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:121104400-121105000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr8:121104400-121105000	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr8:121104600-121105200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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