Variant report

Variant	rs58252479
Chromosome Location	chr8:121119401-121119402
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12678023	0.85[AFR][1000 genomes]
rs59258952	0.94[AFR][1000 genomes]
rs59400707	1.00[AMR][1000 genomes]
rs60163884	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60298200	1.00[AMR][1000 genomes]
rs61179468	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61396869	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7010834	0.86[AFR][1000 genomes]
rs73704242	1.00[AMR][1000 genomes]
rs7826920	0.84[AFR][1000 genomes]
rs7827008	0.83[AFR][1000 genomes]
rs7827802	1.00[AMR][1000 genomes]
rs7846067	1.00[AMR][1000 genomes]
rs7846510	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891418	chr8:120600965-121301474	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	esv3348294	chr8:121000288-121250984	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv6364	chr8:121107149-121152206	Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:121114800-121136000	Weak transcription	Aorta	Aorta
2	chr8:121116200-121120200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr8:121118800-121120000	Weak transcription	NHDF-Ad	bronchial
4	chr8:121119200-121120000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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