Variant report

Variant	rs7016388
Chromosome Location	chr8:121101865-121101866
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:121100236..121103118-chr8:121103170..121106043,3	K562	blood:
2	chr8:121101214..121101978-chr8:121357224..121358279,4	MCF-7	breast:
3	chr8:121101234..121102161-chr8:121433716..121434410,3	MCF-7	breast:
4	chr8:121101262..121102410-chr8:121433293..121434444,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000187955	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10087151	0.90[CEU][hapmap];0.81[CHB][hapmap];0.80[CHD][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.84[EUR][1000 genomes]
rs10104973	0.93[ASW][hapmap];0.90[CEU][hapmap];0.87[CHB][hapmap];0.92[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.97[TSI][hapmap];0.86[YRI][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10110722	0.90[CEU][hapmap];0.82[TSI][hapmap]
rs10808507	0.81[CHB][hapmap];0.81[CHD][hapmap];1.00[MEX][hapmap];0.82[TSI][hapmap]
rs10955954	0.90[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11774123	0.90[CEU][hapmap];0.87[CHB][hapmap];0.92[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12678023	0.90[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1519814	0.90[CEU][hapmap];0.87[CHB][hapmap];0.92[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4133251	0.84[EUR][1000 genomes]
rs4271006	0.90[CEU][hapmap];0.80[CHB][hapmap];0.83[CHD][hapmap];0.92[GIH][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4369033	0.90[CEU][hapmap];0.85[CHB][hapmap];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4478617	0.90[CEU][hapmap]
rs4504680	0.90[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4588897	0.90[CEU][hapmap];0.87[CHB][hapmap];0.83[CHD][hapmap];0.92[GIH][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4601361	0.86[CEU][hapmap];0.82[TSI][hapmap]
rs4871036	1.00[CEU][hapmap];0.83[CHB][hapmap];0.92[JPT][hapmap];0.94[YRI][hapmap];0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4871037	0.90[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4871040	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4871041	0.90[CEU][hapmap];0.87[CHB][hapmap];0.83[CHD][hapmap];0.92[GIH][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4871045	0.84[EUR][1000 genomes]
rs6469900	0.90[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6469901	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6469902	0.95[CEU][hapmap];0.80[CHB][hapmap];0.84[EUR][1000 genomes]
rs6983133	0.84[EUR][1000 genomes]
rs6992410	0.90[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6995843	0.90[CEU][hapmap];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7000103	0.90[CEU][hapmap];0.84[EUR][1000 genomes]
rs7000609	0.90[CEU][hapmap];0.81[CHB][hapmap];0.86[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7010834	0.81[YRI][hapmap]
rs7818027	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7822384	0.81[CHD][hapmap]
rs7826920	0.90[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7827008	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891418	chr8:120600965-121301474	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	esv3348294	chr8:121000288-121250984	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1025923	chr8:121093383-121108706	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:121097600-121104400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr8:121100400-121104400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr8:121101400-121102400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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