Variant report

Variant	rs10110722
Chromosome Location	chr8:121178112-121178113
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10087151	1.00[CEU][hapmap];0.81[CHD][hapmap];0.81[TSI][hapmap];0.87[EUR][1000 genomes]
rs10104973	1.00[CEU][hapmap];0.85[TSI][hapmap]
rs10808507	0.86[CEU][hapmap];0.82[CHD][hapmap]
rs10955954	1.00[CEU][hapmap]
rs11774123	1.00[CEU][hapmap];0.85[TSI][hapmap]
rs12543460	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12546625	0.80[ASW][hapmap]
rs12678023	1.00[CEU][hapmap]
rs12680859	0.83[ASW][hapmap]
rs1519814	1.00[CEU][hapmap];0.85[TSI][hapmap]
rs4133251	0.87[EUR][1000 genomes]
rs4271006	1.00[CEU][hapmap];0.81[CHD][hapmap];0.85[TSI][hapmap];0.87[EUR][1000 genomes]
rs4369033	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs4478617	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4504680	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs4588897	1.00[CEU][hapmap];0.85[TSI][hapmap];0.87[EUR][1000 genomes]
rs4601361	0.92[ASW][hapmap];0.95[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4871036	0.90[CEU][hapmap]
rs4871037	1.00[CEU][hapmap]
rs4871040	0.87[EUR][1000 genomes]
rs4871041	1.00[CEU][hapmap];0.85[TSI][hapmap];0.87[EUR][1000 genomes]
rs4871044	0.83[ASW][hapmap]
rs4871045	0.87[EUR][1000 genomes]
rs6469900	1.00[CEU][hapmap]
rs6469901	0.87[EUR][1000 genomes]
rs6469902	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs6983133	0.87[EUR][1000 genomes]
rs6992410	1.00[CEU][hapmap]
rs6995843	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs7000103	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs7000609	1.00[CEU][hapmap];0.82[TSI][hapmap]
rs7016388	0.90[CEU][hapmap];0.82[TSI][hapmap]
rs7818027	0.87[EUR][1000 genomes]
rs7826920	1.00[CEU][hapmap]
rs7827219	0.83[ASW][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891418	chr8:120600965-121301474	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	esv3348294	chr8:121000288-121250984	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10110722	MTBP	cis	cerebellum	SCAN

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:121159600-121186200	Weak transcription	Fetal Muscle Trunk	muscle
2	chr8:121170800-121179600	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr8:121172600-121178400	Enhancers	Fetal Intestine Small	intestine
4	chr8:121173400-121178800	Weak transcription	Colon Smooth Muscle	Colon
5	chr8:121173600-121178400	Enhancers	Fetal Intestine Large	intestine
6	chr8:121174200-121179600	Weak transcription	Stomach Smooth Muscle	stomach
7	chr8:121174200-121179800	Weak transcription	Rectal Smooth Muscle	rectum
8	chr8:121175600-121179400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr8:121175600-121183600	Weak transcription	Duodenum Mucosa	Duodenum
10	chr8:121176400-121180200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr8:121176600-121178400	Enhancers	Ovary	ovary
12	chr8:121176600-121180400	Enhancers	Fetal Lung	lung
13	chr8:121176800-121178200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr8:121176800-121178400	Enhancers	Osteobl	bone
15	chr8:121176800-121179200	Enhancers	Aorta	Aorta
16	chr8:121177600-121178200	Enhancers	Fetal Muscle Leg	muscle
17	chr8:121177600-121178400	Enhancers	Placenta	Placenta
18	chr8:121177600-121181200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr8:121177800-121178200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr8:121177800-121179000	Genic enhancers	Fetal Stomach	stomach
21	chr8:121177800-121179400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr8:121178000-121179200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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