Variant report

Variant	rs10087151
Chromosome Location	chr8:121172261-121172262
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:121158106..121160330-chr8:121170327..121173169,2	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10086829	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10096465	1.00[YRI][hapmap]
rs10104973	1.00[CEU][hapmap];0.94[CHB][hapmap];0.88[CHD][hapmap];0.86[GIH][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.86[EUR][1000 genomes]
rs10110722	1.00[CEU][hapmap];0.81[CHD][hapmap];0.81[TSI][hapmap];0.87[EUR][1000 genomes]
rs10808507	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10955954	1.00[CEU][hapmap];0.94[CHB][hapmap];0.86[EUR][1000 genomes]
rs11774123	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];0.88[CHD][hapmap];0.86[GIH][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];0.86[EUR][1000 genomes]
rs12543460	0.88[EUR][1000 genomes]
rs12548223	1.00[YRI][hapmap]
rs12678023	1.00[CEU][hapmap];0.93[CHB][hapmap];0.86[EUR][1000 genomes]
rs1519814	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];0.88[CHD][hapmap];0.86[GIH][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];0.86[EUR][1000 genomes]
rs2326434	0.82[ASW][hapmap]
rs4133251	1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4271006	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4369033	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4478617	1.00[CEU][hapmap];0.82[CHB][hapmap]
rs4504680	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4588897	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4601361	0.95[CEU][hapmap];0.82[CHB][hapmap];0.83[CHD][hapmap];0.81[TSI][hapmap];0.88[EUR][1000 genomes]
rs4871036	0.90[CEU][hapmap];0.84[JPT][hapmap];0.83[EUR][1000 genomes]
rs4871037	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[YRI][hapmap];0.86[EUR][1000 genomes]
rs4871040	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4871041	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4871045	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6469900	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[YRI][hapmap];0.87[EUR][1000 genomes]
rs6469901	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6469902	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6983133	0.90[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6992410	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[YRI][hapmap];0.86[EUR][1000 genomes]
rs6995843	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7000103	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7000609	1.00[ASW][hapmap];1.00[CEU][hapmap];0.87[CHB][hapmap];0.87[CHD][hapmap];0.86[GIH][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.86[EUR][1000 genomes]
rs7016388	0.90[CEU][hapmap];0.81[CHB][hapmap];0.80[CHD][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.84[EUR][1000 genomes]
rs7818027	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7822384	1.00[ASW][hapmap]
rs7826920	1.00[CEU][hapmap];0.94[CHB][hapmap];0.85[EUR][1000 genomes]
rs7827008	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891418	chr8:120600965-121301474	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	esv3348294	chr8:121000288-121250984	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10087151	MTBP	cis	cerebellum	SCAN

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:121154600-121173800	Weak transcription	Fetal Stomach	stomach
2	chr8:121154600-121175200	Weak transcription	Aorta	Aorta
3	chr8:121159600-121186200	Weak transcription	Fetal Muscle Trunk	muscle
4	chr8:121162400-121173200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr8:121165600-121174600	Weak transcription	Fetal Muscle Leg	muscle
6	chr8:121165600-121176800	Weak transcription	Psoas Muscle	Psoas
7	chr8:121166400-121177000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr8:121166400-121177600	Weak transcription	Placenta	Placenta
9	chr8:121166800-121176000	Weak transcription	Ovary	ovary
10	chr8:121166800-121176800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr8:121167000-121178000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr8:121167800-121173200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr8:121168400-121174600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr8:121169000-121172600	Weak transcription	Fetal Intestine Small	intestine
15	chr8:121169200-121173800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr8:121170800-121179600	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr8:121171600-121172600	Weak transcription	Fetal Lung	lung
18	chr8:121172000-121172800	Enhancers	Fetal Intestine Large	intestine

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