Variant report

Variant	rs16893819
Chromosome Location	chr8:121296045-121296046
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10088126	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10098327	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10106845	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10107534	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10110786	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.84[TSI][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1158471	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12678374	0.83[YRI][hapmap]
rs1531131	0.83[YRI][hapmap]
rs16893907	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17236463	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes]
rs17237275	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17833361	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes]
rs17833457	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17833992	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1993389	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28377018	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28465286	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28521120	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28569909	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28755949	0.88[AMR][1000 genomes]
rs56311349	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62527048	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62527051	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62527054	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73329094	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7357581	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891418	chr8:120600965-121301474	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv891420	chr8:121194900-121561369	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv612112	chr8:121234298-121385167	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv891421	chr8:121292407-121653902	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:121284800-121347800	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr8:121285200-121299000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr8:121287400-121322600	Weak transcription	Fetal Muscle Trunk	muscle
4	chr8:121289400-121299200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
5	chr8:121291800-121301000	Weak transcription	Fetal Intestine Small	intestine
6	chr8:121293400-121333200	Weak transcription	Fetal Intestine Large	intestine
7	chr8:121293600-121312000	Weak transcription	Placenta	Placenta
8	chr8:121294000-121299000	Strong transcription	Fetal Lung	lung
9	chr8:121294200-121311200	Weak transcription	Fetal Muscle Leg	muscle
10	chr8:121294600-121299000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr8:121295000-121299400	Strong transcription	Aorta	Aorta
12	chr8:121295400-121313000	Weak transcription	Fetal Stomach	stomach
13	chr8:121295400-121313600	Weak transcription	Ovary	ovary
14	chr8:121295800-121296400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr8:121295800-121299200	Weak transcription	NHDF-Ad	bronchial

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links