Variant report

Variant	rs17236463
Chromosome Location	chr8:121272063-121272064
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10088126	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10098327	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10106845	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10107534	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10110786	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1158471	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16893819	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes]
rs16893907	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17237275	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17833361	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17833457	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17833992	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1993389	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28377018	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28465286	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28521120	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28569909	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28755949	0.87[AMR][1000 genomes]
rs56311349	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62527048	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62527051	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62527054	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7011381	1.00[CHB][hapmap]
rs73329094	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7357581	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891418	chr8:120600965-121301474	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv891420	chr8:121194900-121561369	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv612112	chr8:121234298-121385167	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:121254600-121278400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr8:121254800-121278200	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr8:121255400-121278400	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr8:121258000-121274600	Weak transcription	Fetal Muscle Trunk	muscle
5	chr8:121262000-121275400	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr8:121262800-121283800	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr8:121263800-121275600	Weak transcription	Fetal Muscle Leg	muscle
8	chr8:121265800-121278600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr8:121267600-121275200	Weak transcription	Fetal Stomach	stomach
10	chr8:121267800-121283400	Weak transcription	Aorta	Aorta
11	chr8:121269200-121272200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr8:121269200-121272200	Enhancers	NHDF-Ad	bronchial
13	chr8:121269400-121272200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr8:121269600-121272200	Enhancers	HUVEC	blood vessel
15	chr8:121270200-121272200	Enhancers	Osteobl	bone
16	chr8:121270400-121276600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr8:121270600-121272800	Weak transcription	Fetal Lung	lung
18	chr8:121270600-121275400	Weak transcription	Fetal Kidney	kidney
19	chr8:121270600-121275400	Weak transcription	Rectal Smooth Muscle	rectum
20	chr8:121270800-121275400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr8:121270800-121275400	Weak transcription	Ovary	ovary
22	chr8:121270800-121275600	Weak transcription	Psoas Muscle	Psoas
23	chr8:121270800-121277600	Weak transcription	HSMMtube	muscle
24	chr8:121271000-121272200	Enhancers	Muscle Satellite Cultured Cells	--
25	chr8:121271000-121272200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr8:121271000-121275000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr8:121271200-121275400	Weak transcription	Colon Smooth Muscle	Colon
28	chr8:121271200-121283600	Weak transcription	Fetal Intestine Large	intestine
29	chr8:121271400-121275400	Weak transcription	Adipose Nuclei	Adipose
30	chr8:121271600-121275000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr8:121271800-121272600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr8:121271800-121273200	Strong transcription	Placenta	Placenta
33	chr8:121272000-121275400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr8:121272000-121275400	Weak transcription	NHLF	lung

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