Variant report

Variant	rs16893923
Chromosome Location	chr8:121342538-121342539
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11988416	1.00[ASN][1000 genomes]
rs4871071	1.00[ASN][1000 genomes]
rs6989609	1.00[ASN][1000 genomes]
rs6990426	1.00[ASN][1000 genomes]
rs7824721	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891420	chr8:121194900-121561369	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv612112	chr8:121234298-121385167	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv891421	chr8:121292407-121653902	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:121284800-121347800	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr8:121320400-121372600	Weak transcription	Fetal Intestine Small	intestine
3	chr8:121323200-121344800	Weak transcription	Fetal Muscle Trunk	muscle
4	chr8:121323800-121345800	Weak transcription	Fetal Muscle Leg	muscle
5	chr8:121333800-121383800	Weak transcription	Fetal Intestine Large	intestine
6	chr8:121337000-121344200	Weak transcription	Fetal Lung	lung
7	chr8:121337000-121345800	Weak transcription	Fetal Stomach	stomach
8	chr8:121337000-121348000	Weak transcription	Ovary	ovary
9	chr8:121337400-121346800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr8:121338600-121344200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr8:121339800-121346800	Weak transcription	Aorta	Aorta
12	chr8:121341000-121342800	Enhancers	Osteobl	bone
13	chr8:121341000-121347600	Weak transcription	Stomach Smooth Muscle	stomach
14	chr8:121341600-121342600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr8:121341600-121343800	Weak transcription	NHDF-Ad	bronchial
16	chr8:121341800-121345600	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr8:121341800-121347600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr8:121342200-121343800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr8:121342200-121345400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr8:121342200-121347000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr8:121342400-121342600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr8:121342400-121345200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr8:121342400-121347400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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