Variant report

Variant	rs7824721
Chromosome Location	chr8:121409516-121409517
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:121407423..121410250-chr8:121415555..121418365,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11988416	1.00[ASN][1000 genomes]
rs16893923	1.00[ASN][1000 genomes]
rs4871071	1.00[ASN][1000 genomes]
rs6989609	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6990426	1.00[ASN][1000 genomes]
rs7006428	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891420	chr8:121194900-121561369	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv891421	chr8:121292407-121653902	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1033386	chr8:121369943-121501239	Flanking Active TSS Strong transcription Active TSS Enhancers Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:121396800-121416800	Weak transcription	Aorta	Aorta
2	chr8:121401200-121410000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr8:121401400-121410400	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr8:121402000-121456400	Weak transcription	Small Intestine	intestine
5	chr8:121402200-121415600	Weak transcription	Esophagus	oesophagus
6	chr8:121402200-121416200	Weak transcription	Stomach Mucosa	stomach
7	chr8:121402400-121409600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr8:121402400-121409600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr8:121402800-121410000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr8:121403200-121412000	Strong transcription	Primary T cells from cord blood	blood
11	chr8:121403600-121409600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr8:121403600-121410800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr8:121403600-121412400	Weak transcription	Fetal Brain Male	brain
14	chr8:121403800-121410000	Weak transcription	Colon Smooth Muscle	Colon
15	chr8:121404000-121433400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr8:121404200-121411000	Strong transcription	Monocytes-CD14+_RO01746	blood
17	chr8:121404400-121409600	Weak transcription	HMEC	breast
18	chr8:121404400-121421400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr8:121404400-121454400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr8:121404600-121411000	Strong transcription	Primary T helper cells fromperipheralblood	blood
21	chr8:121404600-121456000	Weak transcription	Colonic Mucosa	Colon
22	chr8:121404800-121410800	Strong transcription	Liver	Liver
23	chr8:121404800-121416600	Weak transcription	Brain Cingulate Gyrus	brain
24	chr8:121405000-121411800	Strong transcription	Primary T cells fromperipheralblood	blood
25	chr8:121405000-121456000	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr8:121405200-121409600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
27	chr8:121405200-121409800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr8:121405200-121410200	Weak transcription	Fetal Brain Female	brain
29	chr8:121405200-121410600	Strong transcription	Primary monocytes fromperipheralblood	blood
30	chr8:121405200-121411800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr8:121405200-121414400	Strong transcription	Primary T helper cells PMA-I stimulated	--
32	chr8:121405400-121409800	Weak transcription	Rectal Smooth Muscle	rectum
33	chr8:121405400-121410800	Strong transcription	Adipose Nuclei	Adipose
34	chr8:121405400-121411000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr8:121405600-121410400	Strong transcription	Primary hematopoietic stem cells	blood
36	chr8:121405600-121411200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr8:121405600-121455600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
38	chr8:121405800-121410200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
39	chr8:121405800-121411000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr8:121405800-121411200	Strong transcription	Primary B cells from peripheral blood	blood
41	chr8:121405800-121412200	Weak transcription	Fetal Kidney	kidney
42	chr8:121406000-121409600	Weak transcription	Gastric	stomach
43	chr8:121406000-121409800	Weak transcription	H9 Cell Line	embryonic stem cell
44	chr8:121406000-121409800	Weak transcription	Brain Inferior Temporal Lobe	brain
45	chr8:121406000-121411000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
46	chr8:121406400-121409800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr8:121406800-121415000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr8:121407200-121412000	Weak transcription	A549	lung
49	chr8:121407600-121410400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr8:121407800-121409600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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