Variant report

Variant	rs16894835
Chromosome Location	chr8:122202074-122202075
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10088912	1.00[AMR][1000 genomes]
rs10097717	1.00[AMR][1000 genomes]
rs10100822	1.00[AMR][1000 genomes]
rs10505393	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1504661	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1504666	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16894788	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16894807	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16894808	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16894827	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16894830	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16894833	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16894841	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16894863	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16894888	1.00[AMR][1000 genomes]
rs7003374	1.00[AMR][1000 genomes]
rs7018279	1.00[AMR][1000 genomes]
rs7018441	1.00[AMR][1000 genomes]
rs7815980	1.00[AMR][1000 genomes]
rs7816492	1.00[AMR][1000 genomes]
rs7838056	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891424	chr8:121873345-122393258	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv1844734	chr8:121928250-122283585	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv3330574	chr8:122039099-122386130	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv891426	chr8:122078334-122393258	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1021839	chr8:122173682-122240824	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:122201400-122203000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr8:122201400-122203200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr8:122201400-122203600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr8:122201400-122204000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr8:122201400-122204400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr8:122201600-122203800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr8:122201600-122204400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr8:122201600-122204400	Enhancers	Osteobl	bone
9	chr8:122201800-122202600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr8:122201800-122202600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr8:122201800-122203800	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr8:122201800-122204600	Enhancers	Muscle Satellite Cultured Cells	--
13	chr8:122202000-122202400	Enhancers	Primary B cells from peripheral blood	blood
14	chr8:122202000-122202600	Enhancers	Primary hematopoietic stem cells	blood
15	chr8:122202000-122202600	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr8:122202000-122204400	Enhancers	HSMMtube	muscle
17	chr8:122202000-122204600	Enhancers	HSMM	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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