Variant report

Variant	rs7838056
Chromosome Location	chr8:122221845-122221846
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10088912	1.00[AMR][1000 genomes]
rs10097717	1.00[AMR][1000 genomes]
rs10100822	1.00[AMR][1000 genomes]
rs10505393	1.00[AMR][1000 genomes]
rs1504661	1.00[AMR][1000 genomes]
rs1504666	1.00[AMR][1000 genomes]
rs16894788	1.00[AMR][1000 genomes]
rs16894807	1.00[AMR][1000 genomes]
rs16894808	1.00[AMR][1000 genomes]
rs16894827	1.00[AMR][1000 genomes]
rs16894830	1.00[AMR][1000 genomes]
rs16894833	1.00[AMR][1000 genomes]
rs16894835	1.00[AMR][1000 genomes]
rs16894841	1.00[AMR][1000 genomes]
rs16894863	1.00[AMR][1000 genomes]
rs16894888	1.00[AMR][1000 genomes]
rs7003374	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7018279	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7018441	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7815980	1.00[AMR][1000 genomes]
rs7816492	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891424	chr8:121873345-122393258	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv1844734	chr8:121928250-122283585	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv3330574	chr8:122039099-122386130	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv891426	chr8:122078334-122393258	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1021839	chr8:122173682-122240824	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:122218600-122224400	Weak transcription	HSMMtube	muscle
2	chr8:122219000-122224000	Weak transcription	NHDF-Ad	bronchial
3	chr8:122219800-122222000	Weak transcription	Osteobl	bone
4	chr8:122220000-122222000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr8:122220000-122224000	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr8:122221600-122222400	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr8:122221600-122222600	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr8:122221600-122222600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr8:122221600-122223000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr8:122221800-122222200	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr8:122221800-122222200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr8:122221800-122222600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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