Variant report

Variant	rs16895101
Chromosome Location	chr6:29532445-29532446
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs2057010	0.94[ASN][1000 genomes]
rs2058325	0.82[ASN][1000 genomes]
rs28359972	0.82[ASN][1000 genomes]
rs28749524	0.82[ASN][1000 genomes]
rs29219	0.94[ASN][1000 genomes]
rs29256	0.86[ASN][1000 genomes]
rs29266	0.86[ASN][1000 genomes]
rs3025628	0.94[ASN][1000 genomes]
rs3025642	0.94[ASN][1000 genomes]
rs362515	0.86[ASN][1000 genomes]
rs362517	0.86[ASN][1000 genomes]
rs55701059	0.86[ASN][1000 genomes]
rs55871431	0.86[ASN][1000 genomes]
rs55888673	0.86[ASN][1000 genomes]
rs55971964	0.88[ASN][1000 genomes]
rs56020557	0.83[ASN][1000 genomes]
rs56045105	0.94[ASN][1000 genomes]
rs56106029	0.86[ASN][1000 genomes]
rs56142919	0.94[ASN][1000 genomes]
rs56155438	0.94[ASN][1000 genomes]
rs56393713	0.94[ASN][1000 genomes]
rs62392941	0.91[ASN][1000 genomes]
rs62392942	0.88[ASN][1000 genomes]
rs62392943	0.88[ASN][1000 genomes]
rs62406580	0.90[ASN][1000 genomes]
rs62406582	0.86[ASN][1000 genomes]
rs62406583	0.94[ASN][1000 genomes]
rs62406584	0.86[ASN][1000 genomes]
rs72831507	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758039	chr6:29469101-29672665	Flanking Active TSS Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	esv2759411	chr6:29469101-29672665	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv5239	chr6:29527407-29566446	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:29531000-29533400	Enhancers	Primary B cells from peripheral blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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