Variant report

Variant	rs362515
Chromosome Location	chr6:29569532-29569533
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:29560551..29562485-chr6:29568243..29569755,2	K562	blood:
2	chr6:29567658..29569553-chr6:29570192..29572225,2	K562	blood:
3	chr6:29564780..29575712-chr6:29592511..29597522,14	K562	blood:
4	chr6:29566782..29572750-chr6:29592808..29598864,8	K562	blood:

Variant related genes	Relation type
ENSG00000204681	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs16895101	0.86[ASN][1000 genomes]
rs2057010	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2058325	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2058326	0.91[ASN][1000 genomes]
rs28359971	0.93[ASN][1000 genomes]
rs28359972	0.95[ASN][1000 genomes]
rs28749524	0.95[ASN][1000 genomes]
rs29219	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs29256	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs29266	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3025628	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3025642	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs362517	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55701059	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55871431	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55888673	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55971964	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56020557	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56045105	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56106029	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56142919	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56155438	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56393713	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62392941	0.95[ASN][1000 genomes]
rs62392942	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62392943	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62392944	0.92[EUR][1000 genomes]
rs62406580	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62406582	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62406583	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62406584	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72831507	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758039	chr6:29469101-29672665	Flanking Active TSS Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	esv2759411	chr6:29469101-29672665	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv528285	chr6:29566842-29588146	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv462671	chr6:29566842-29588146	Strong transcription Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv601229	chr6:29566842-29588146	Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:29561600-29569600	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr6:29561600-29569800	Weak transcription	Fetal Muscle Trunk	muscle
3	chr6:29561600-29570000	Weak transcription	Brain Hippocampus Middle	brain
4	chr6:29561600-29570000	Weak transcription	Lung	lung
5	chr6:29561600-29570000	Weak transcription	Rectal Smooth Muscle	rectum
6	chr6:29561600-29570200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr6:29561600-29570600	Weak transcription	Right Ventricle	heart
8	chr6:29561600-29571600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr6:29561800-29570200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr6:29561800-29571600	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr6:29561800-29573200	Weak transcription	HSMMtube	muscle
12	chr6:29562000-29569800	Weak transcription	K562	blood
13	chr6:29562000-29570600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr6:29562000-29571800	Weak transcription	Left Ventricle	heart
15	chr6:29562000-29572600	Weak transcription	Fetal Heart	heart
16	chr6:29564000-29569600	Weak transcription	Fetal Brain Male	brain
17	chr6:29564400-29569600	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr6:29565200-29570200	Weak transcription	Fetal Kidney	kidney
19	chr6:29565600-29570400	Weak transcription	NHDF-Ad	bronchial
20	chr6:29565600-29572200	Weak transcription	Primary T helper cells PMA-I stimulated	--
21	chr6:29565800-29569800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr6:29566000-29570000	Weak transcription	NHLF	lung
23	chr6:29566400-29569600	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr6:29566400-29595200	Weak transcription	Right Atrium	heart
25	chr6:29566600-29570200	Weak transcription	Primary T cells fromperipheralblood	blood
26	chr6:29566600-29570200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr6:29566600-29570400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr6:29566600-29587000	Strong transcription	Primary neutrophils fromperipheralblood	blood
29	chr6:29566800-29570000	Weak transcription	Monocytes-CD14+_RO01746	blood
30	chr6:29566800-29570200	Weak transcription	Adipose Nuclei	Adipose
31	chr6:29566800-29570400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
32	chr6:29566800-29570600	Strong transcription	H1 Cell Line	embryonic stem cell
33	chr6:29566800-29570800	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr6:29566800-29570800	Weak transcription	Colon Smooth Muscle	Colon
35	chr6:29566800-29571400	Weak transcription	Primary T helper cells fromperipheralblood	blood
36	chr6:29566800-29571800	Strong transcription	Fetal Brain Female	brain
37	chr6:29566800-29572000	Weak transcription	Pancreas	Pancrea
38	chr6:29566800-29572400	Weak transcription	HUVEC	blood vessel
39	chr6:29566800-29584600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr6:29566800-29590000	Strong transcription	H9 Cell Line	embryonic stem cell
41	chr6:29566800-29590600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr6:29567000-29570400	Weak transcription	Primary B cells from cord blood	blood
43	chr6:29567000-29570400	Strong transcription	Cortex derived primary cultured neurospheres	brain
44	chr6:29567000-29571000	Strong transcription	HUES48 Cell Line	embryonic stem cell
45	chr6:29567000-29571200	Weak transcription	Brain Angular Gyrus	brain
46	chr6:29567000-29571800	Weak transcription	Primary monocytes fromperipheralblood	blood
47	chr6:29567000-29589800	Strong transcription	HUES6 Cell Line	embryonic stem cell
48	chr6:29567200-29571800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr6:29567200-29571800	Weak transcription	Esophagus	oesophagus
50	chr6:29567200-29589400	Strong transcription	iPS-20b Cell Line	embryonic stem cell

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