Variant report

Variant	rs16895112
Chromosome Location	chr6:163978972-163978973
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:163965536..163967717-chr6:163977129..163979848,2	K562	blood:
2	chr6:163978491..163982172-chr6:163982815..163986185,4	K562	blood:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs16895106	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16895109	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56276977	0.83[AMR][1000 genomes]
rs56375308	0.83[AMR][1000 genomes]
rs57075041	0.83[AMR][1000 genomes]
rs57318320	0.83[AMR][1000 genomes]
rs57767588	0.83[AMR][1000 genomes]
rs57832687	0.83[AMR][1000 genomes]
rs57904637	0.83[AMR][1000 genomes]
rs57945325	0.83[AMR][1000 genomes]
rs57992259	0.83[AMR][1000 genomes]
rs58159136	0.83[AMR][1000 genomes]
rs59991282	0.83[AMR][1000 genomes]
rs60058520	0.83[AMR][1000 genomes]
rs60353098	0.83[AMR][1000 genomes]
rs60606954	0.83[AMR][1000 genomes]
rs60632275	0.83[AMR][1000 genomes]
rs60873852	0.83[AMR][1000 genomes]
rs61358847	0.83[AMR][1000 genomes]
rs61586762	0.83[AMR][1000 genomes]
rs6928179	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6934718	0.83[AMR][1000 genomes]
rs6934729	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6936664	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73244762	0.83[AMR][1000 genomes]
rs73244765	0.83[AMR][1000 genomes]
rs73244801	0.83[AMR][1000 genomes]
rs73246605	0.83[AMR][1000 genomes]
rs73246607	0.83[AMR][1000 genomes]
rs73246609	0.83[AMR][1000 genomes]
rs73246610	0.83[AMR][1000 genomes]
rs73246620	0.83[AMR][1000 genomes]
rs73246625	0.83[AMR][1000 genomes]
rs73246641	0.83[AMR][1000 genomes]
rs73246647	0.83[AMR][1000 genomes]
rs73246651	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73246654	0.83[AMR][1000 genomes]
rs73246656	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73246662	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73246665	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73246671	0.83[AMR][1000 genomes]
rs73246675	0.83[AMR][1000 genomes]
rs73246685	0.83[AMR][1000 genomes]
rs73246688	0.83[AMR][1000 genomes]
rs73246696	0.83[AMR][1000 genomes]
rs73246702	0.83[AMR][1000 genomes]
rs73248703	0.83[AMR][1000 genomes]
rs73784461	0.83[AMR][1000 genomes]
rs73784465	0.83[AMR][1000 genomes]
rs73784482	0.83[AMR][1000 genomes]
rs73784483	0.83[AMR][1000 genomes]
rs9688570	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017495	chr6:163856399-163981095	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1018860	chr6:163939347-164532579	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv538526	chr6:163939347-164532579	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:163926600-163991800	Weak transcription	Esophagus	oesophagus
2	chr6:163940200-163983000	Weak transcription	Primary T helper cells PMA-I stimulated	--
3	chr6:163949600-163992000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr6:163949600-163995400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr6:163951200-163993200	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr6:163951600-163985800	Weak transcription	Hela-S3	cervix
7	chr6:163952400-163984400	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr6:163952600-163979600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr6:163952600-163981400	Weak transcription	Pancreas	Pancrea
10	chr6:163952600-163982800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr6:163952600-163996600	Weak transcription	Gastric	stomach
12	chr6:163954000-163979400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr6:163954000-163984200	Weak transcription	Primary hematopoietic stem cells	blood
14	chr6:163954000-163984400	Weak transcription	Aorta	Aorta
15	chr6:163954000-163991600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr6:163954800-163984200	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr6:163955000-163979600	Weak transcription	NHEK	skin
18	chr6:163955200-163984200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr6:163955800-163983000	Weak transcription	Rectal Smooth Muscle	rectum
20	chr6:163955800-163984400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr6:163956000-163979400	Weak transcription	NHLF	lung
22	chr6:163956200-163979800	Weak transcription	NHDF-Ad	bronchial
23	chr6:163957800-163982800	Weak transcription	Placenta	Placenta
24	chr6:163957800-163983000	Weak transcription	Osteobl	bone
25	chr6:163958200-163984600	Weak transcription	HMEC	breast
26	chr6:163958200-163991600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr6:163958400-163984400	Weak transcription	Fetal Thymus	thymus
28	chr6:163958600-163980000	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr6:163958800-163979600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr6:163958800-163983000	Weak transcription	NH-A	brain
31	chr6:163959600-163984400	Weak transcription	Ovary	ovary
32	chr6:163959800-163979400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr6:163959800-163997200	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr6:163960400-163984400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr6:163960600-163993000	Weak transcription	A549	lung
36	chr6:163961600-163984800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
37	chr6:163965400-163984600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr6:163965600-163995000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
39	chr6:163966600-163979400	Weak transcription	H1 Cell Line	embryonic stem cell
40	chr6:163966800-163979400	Weak transcription	HUES6 Cell Line	embryonic stem cell
41	chr6:163966800-163983200	Weak transcription	HUES48 Cell Line	embryonic stem cell
42	chr6:163966800-163984400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr6:163966800-163987000	Weak transcription	Colon Smooth Muscle	Colon
44	chr6:163967000-163982800	Weak transcription	HUES64 Cell Line	embryonic stem cell
45	chr6:163967200-163984200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
46	chr6:163968800-163979600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
47	chr6:163968800-163979600	Weak transcription	HSMMtube	muscle
48	chr6:163968800-163991800	Weak transcription	Fetal Brain Male	brain
49	chr6:163969000-163991800	Weak transcription	Pancreatic Islets	Pancreatic Islet
50	chr6:163969600-163979800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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