Variant report

Variant	rs57767588
Chromosome Location	chr6:163881242-163881243
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:163879929..163881986-chr6:163883834..163886314,2	K562	blood:

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs16895106	0.83[AMR][1000 genomes]
rs16895109	0.83[AMR][1000 genomes]
rs16895112	0.83[AMR][1000 genomes]
rs56003099	1.00[AFR][1000 genomes]
rs56276977	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56375308	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57075041	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57318320	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57832687	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57845473	0.93[AFR][1000 genomes]
rs57904637	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57945325	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57992259	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58111601	1.00[AFR][1000 genomes]
rs58159136	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58495293	0.93[AFR][1000 genomes]
rs59991282	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60058520	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60353098	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60606954	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60632275	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60873852	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61358847	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61586762	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6934718	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6934729	0.83[AMR][1000 genomes]
rs6936664	0.83[AMR][1000 genomes]
rs73244762	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73244765	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73244775	1.00[AFR][1000 genomes]
rs73244776	1.00[AFR][1000 genomes]
rs73244777	1.00[AFR][1000 genomes]
rs73244778	1.00[AFR][1000 genomes]
rs73244781	1.00[AFR][1000 genomes]
rs73244785	0.93[AFR][1000 genomes]
rs73244786	0.93[AFR][1000 genomes]
rs73244787	0.93[AFR][1000 genomes]
rs73244801	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73246605	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73246607	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73246609	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73246610	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73246620	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73246625	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73246641	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73246647	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73246651	0.83[AMR][1000 genomes]
rs73246654	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73246656	0.83[AMR][1000 genomes]
rs73246662	0.83[AMR][1000 genomes]
rs73246665	0.83[AMR][1000 genomes]
rs73246671	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73246675	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73246685	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73246688	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73246696	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73246702	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73248703	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73784423	1.00[AFR][1000 genomes]
rs73784425	1.00[AFR][1000 genomes]
rs73784461	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73784465	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73784482	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73784483	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73787626	0.93[AFR][1000 genomes]
rs73787637	0.90[AFR][1000 genomes]
rs7771996	0.87[AFR][1000 genomes]
rs9688570	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932127	chr6:163000261-163950870	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv534621	chr6:163731741-163950870	Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv1797109	chr6:163834147-163908115	Genic enhancers Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1019551	chr6:163842358-163965216	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1017495	chr6:163856399-163981095	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv523664	chr6:163858237-163907885	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:163840800-163881400	Weak transcription	Fetal Stomach	stomach
2	chr6:163865200-163881400	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr6:163877800-163881800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:163878000-163881800	Enhancers	HMEC	breast
5	chr6:163878800-163881400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr6:163878800-163881400	Weak transcription	Placenta	Placenta
7	chr6:163878800-163910200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr6:163879200-163881400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr6:163879200-163881400	Weak transcription	Colonic Mucosa	Colon
10	chr6:163879200-163891000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr6:163879200-163891200	Weak transcription	Fetal Kidney	kidney
12	chr6:163879400-163881400	Weak transcription	Fetal Lung	lung
13	chr6:163879400-163884200	Weak transcription	HepG2	liver
14	chr6:163879400-163891000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr6:163879600-163881400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr6:163879600-163881400	Enhancers	Brain Cingulate Gyrus	brain
17	chr6:163880000-163882000	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr6:163880000-163882800	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr6:163880200-163881400	Enhancers	Skeletal Muscle Male	skeletal muscle
20	chr6:163880200-163881400	Enhancers	Thymus	Thymus
21	chr6:163880200-163881600	Enhancers	HUES64 Cell Line	embryonic stem cell
22	chr6:163880200-163881800	Enhancers	Fetal Brain Male	brain
23	chr6:163880200-163882800	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr6:163880400-163881400	Flanking Active TSS	Primary T cells from cord blood	blood
25	chr6:163880400-163881400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
26	chr6:163880400-163881400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr6:163880400-163882000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr6:163880400-163886000	Enhancers	Fetal Heart	heart
29	chr6:163880400-163888800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr6:163880600-163881400	Enhancers	Primary monocytes fromperipheralblood	blood
31	chr6:163880600-163881400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
32	chr6:163880600-163881400	Enhancers	Brain Inferior Temporal Lobe	brain
33	chr6:163880600-163881400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
34	chr6:163880600-163881400	Weak transcription	Esophagus	oesophagus
35	chr6:163880600-163881400	Weak transcription	Fetal Muscle Leg	muscle
36	chr6:163880600-163881400	Weak transcription	Fetal Thymus	thymus
37	chr6:163880600-163881400	Weak transcription	Left Ventricle	heart
38	chr6:163880600-163881600	Weak transcription	Primary neutrophils fromperipheralblood	blood
39	chr6:163880600-163882200	Enhancers	iPS-15b Cell Line	embryonic stem cell
40	chr6:163880600-163882600	Weak transcription	Sigmoid Colon	Sigmoid Colon
41	chr6:163880600-163882800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr6:163880600-163883000	Active TSS	Right Atrium	heart
43	chr6:163880600-163883200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr6:163880600-163890800	Weak transcription	H1 Cell Line	embryonic stem cell
45	chr6:163880600-163891000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr6:163880600-163891000	Weak transcription	Fetal Muscle Trunk	muscle
47	chr6:163880600-163896600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr6:163880600-163897600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr6:163880600-163903200	Weak transcription	Pancreas	Pancrea
50	chr6:163880600-163906600	Weak transcription	Gastric	stomach

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