Variant report

Variant	rs73787626
Chromosome Location	chr6:163795752-163795753
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:163790875..163792483-chr6:163795194..163796907,2	K562	blood:
2	chr6:163764450..163766246-chr6:163795182..163797686,2	K562	blood:

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs56003099	0.93[AFR][1000 genomes]
rs56276977	0.86[AFR][1000 genomes]
rs57075041	0.93[AFR][1000 genomes]
rs57318320	0.86[AFR][1000 genomes]
rs57767588	0.93[AFR][1000 genomes]
rs57832687	0.97[AFR][1000 genomes]
rs57845473	0.86[AFR][1000 genomes]
rs57904637	0.81[AFR][1000 genomes]
rs57945325	0.86[AFR][1000 genomes]
rs57992259	0.86[AFR][1000 genomes]
rs58111601	0.93[AFR][1000 genomes]
rs58159136	0.86[AFR][1000 genomes]
rs58495293	0.86[AFR][1000 genomes]
rs59991282	0.81[AFR][1000 genomes]
rs60058520	0.87[AFR][1000 genomes]
rs60353098	0.84[AFR][1000 genomes]
rs60873852	0.87[AFR][1000 genomes]
rs61358847	0.86[AFR][1000 genomes]
rs61586762	0.81[AFR][1000 genomes]
rs73244762	0.93[AFR][1000 genomes]
rs73244765	0.93[AFR][1000 genomes]
rs73244775	0.93[AFR][1000 genomes]
rs73244776	0.93[AFR][1000 genomes]
rs73244777	0.93[AFR][1000 genomes]
rs73244778	0.93[AFR][1000 genomes]
rs73244781	0.93[AFR][1000 genomes]
rs73244785	0.86[AFR][1000 genomes]
rs73244786	0.86[AFR][1000 genomes]
rs73244787	0.86[AFR][1000 genomes]
rs73244801	0.86[AFR][1000 genomes]
rs73246605	0.86[AFR][1000 genomes]
rs73246607	0.81[AFR][1000 genomes]
rs73246609	0.86[AFR][1000 genomes]
rs73246610	0.86[AFR][1000 genomes]
rs73246620	0.86[AFR][1000 genomes]
rs73246625	0.86[AFR][1000 genomes]
rs73246641	0.81[AFR][1000 genomes]
rs73246647	0.81[AFR][1000 genomes]
rs73246654	0.81[AFR][1000 genomes]
rs73246671	0.86[AFR][1000 genomes]
rs73246675	0.81[AFR][1000 genomes]
rs73246685	0.81[AFR][1000 genomes]
rs73246688	0.86[AFR][1000 genomes]
rs73246696	0.86[AFR][1000 genomes]
rs73784423	0.93[AFR][1000 genomes]
rs73784425	0.93[AFR][1000 genomes]
rs73784461	0.81[AFR][1000 genomes]
rs73784465	0.86[AFR][1000 genomes]
rs73784482	0.86[AFR][1000 genomes]
rs73784483	0.86[AFR][1000 genomes]
rs73787620	0.83[AMR][1000 genomes]
rs73787637	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7771996	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932127	chr6:163000261-163950870	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1022610	chr6:163591786-163814041	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv534621	chr6:163731741-163950870	Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv970668	chr6:163792636-163802489	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:163791000-163813000	Weak transcription	Right Atrium	heart
2	chr6:163792400-163796200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:163792400-163796400	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr6:163794600-163796400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:163794600-163801200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr6:163795200-163800000	Weak transcription	Spleen	Spleen

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