Variant report

Variant	rs16897102
Chromosome Location	chr6:43936729-43936730
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:43936406..43938868-chr6:43953792..43955843,2	K562	blood:
2	chr6:43935439..43940051-chr6:44025278..44028670,5	K562	blood:
3	chr6:43935904..43938156-chr6:43946788..43949354,2	K562	blood:
4	chr6:43935198..43937257-chr6:43948520..43950730,2	K562	blood:
5	chr6:43935439..43940255-chr6:44025278..44028670,7	K562	blood:
6	chr6:43919752..43921366-chr6:43935075..43937302,2	K562	blood:
7	chr6:43737907..43741738-chr6:43934561..43939142,6	K562	blood:
8	chr6:43737907..43739855-chr6:43934169..43936760,2	K562	blood:
9	chr6:43737999..43740726-chr6:43934557..43937494,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000272114	Chromatin interaction
ENSG00000112715	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10948099	1.00[CEU][hapmap]
rs16897100	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.81[AFR][1000 genomes]
rs6458353	1.00[CEU][hapmap]
rs7768780	1.00[CEU][hapmap]
rs7772862	1.00[MEX][hapmap]
rs9394966	1.00[CEU][hapmap]
rs9472148	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931987	chr6:43624625-44350167	Enhancers Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	201 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:43932600-43937000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:43932600-43938200	Weak transcription	Pancreas	Pancrea
3	chr6:43933600-43938800	Weak transcription	Fetal Intestine Small	intestine
4	chr6:43934000-43939600	Weak transcription	Fetal Intestine Large	intestine
5	chr6:43934000-43940200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr6:43934400-43937400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr6:43934600-43939000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr6:43934800-43937400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr6:43934800-43938400	Weak transcription	Right Atrium	heart
10	chr6:43934800-43938600	Weak transcription	Esophagus	oesophagus
11	chr6:43934800-43939000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr6:43935000-43939400	Weak transcription	HMEC	breast
13	chr6:43935400-43937000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr6:43935600-43937000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr6:43936000-43937000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr6:43936000-43937000	Enhancers	iPS-20b Cell Line	embryonic stem cell
17	chr6:43936000-43937000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr6:43936200-43936800	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr6:43936200-43937000	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr6:43936200-43937000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
21	chr6:43936400-43936800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr6:43936400-43936800	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr6:43936400-43937000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr6:43936400-43937200	Enhancers	Primary hematopoietic stem cells short term culture	blood
25	chr6:43936400-43937600	Enhancers	Spleen	Spleen
26	chr6:43936400-43940800	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr6:43936600-43937800	Flanking Active TSS	K562	blood
28	chr6:43936600-43939000	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr6:43936600-43940000	Weak transcription	Cortex derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links