Variant report

Variant	rs9394966
Chromosome Location	chr6:43799460-43799461
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:43797469..43800161-chr6:43930572..43932746,2	K562	blood:
2	chr6:43798104..43799799-chr6:43799892..43801618,2	K562	blood:
3	chr6:43764848..43767461-chr6:43798719..43800719,3	MCF-7	breast:
4	chr6:43798428..43800961-chr6:43862989..43865882,2	K562	blood:
5	chr6:43792560..43795452-chr6:43798342..43801052,2	MCF-7	breast:
6	chr6:43739620..43742341-chr6:43798248..43801147,2	MCF-7	breast:
7	chr6:43736831..43739527-chr6:43798518..43802746,4	MCF-7	breast:
8	chr6:43798194..43802025-chr6:43802068..43806574,6	K562	blood:
9	chr6:43798920..43800809-chr6:43802068..43804394,3	K562	blood:
10	chr6:43736553..43739610-chr6:43795420..43801338,6	MCF-7	breast:
11	chr6:43799163..43801282-chr6:43816446..43818177,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000272114	Chromatin interaction
ENSG00000112715	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10948099	1.00[CEU][hapmap]
rs16897100	1.00[CEU][hapmap]
rs16897102	1.00[CEU][hapmap]
rs6458353	1.00[CEU][hapmap]
rs7768780	1.00[CEU][hapmap]
rs9472122	1.00[CEU][hapmap]
rs9472148	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931987	chr6:43624625-44350167	Enhancers Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	201 gene(s)	inside rSNPs	diseases
2	nsv1018626	chr6:43694649-43803732	Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv428480	chr6:43764313-43929172	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:43767800-43836000	Weak transcription	Right Atrium	heart
2	chr6:43792200-43810800	Weak transcription	Fetal Heart	heart
3	chr6:43792400-43801000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr6:43792600-43801200	Weak transcription	A549	lung
5	chr6:43793400-43801800	Weak transcription	Fetal Kidney	kidney
6	chr6:43793800-43800800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr6:43793800-43830800	Weak transcription	Spleen	Spleen
8	chr6:43794400-43801400	Weak transcription	Fetal Lung	lung
9	chr6:43795800-43800000	Enhancers	Duodenum Mucosa	Duodenum
10	chr6:43796000-43801200	Weak transcription	Lung	lung
11	chr6:43796800-43800800	Weak transcription	Gastric	stomach
12	chr6:43797400-43807200	Enhancers	Fetal Intestine Small	intestine
13	chr6:43798000-43807200	Enhancers	Fetal Intestine Large	intestine
14	chr6:43798200-43799800	Enhancers	Rectal Mucosa Donor 31	rectum
15	chr6:43798400-43799800	Enhancers	Rectal Mucosa Donor 29	rectum
16	chr6:43798400-43807200	Enhancers	Stomach Mucosa	stomach
17	chr6:43799000-43801400	Weak transcription	Colonic Mucosa	Colon
18	chr6:43799000-43803600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr6:43799200-43799800	Enhancers	Pancreatic Islets	Pancreatic Islet
20	chr6:43799200-43799800	Enhancers	Placenta	Placenta
21	chr6:43799200-43799800	Enhancers	Sigmoid Colon	Sigmoid Colon
22	chr6:43799200-43801000	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr6:43799400-43800200	Weak transcription	Pancreas	Pancrea
24	chr6:43799400-43800400	Enhancers	Small Intestine	intestine
25	chr6:43799400-43800800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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