Variant report

Variant	rs16897557
Chromosome Location	chr6:27279632-27279633
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:14)
CpG islands
(count:0)
Chromatin interactive
region (count:2)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:14 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr6:27279507-27280190	H1-hESC	embryonic stem cell:	n/a	n/a
2	MAX	chr6:27279479-27280881	A549	lung:	n/a	n/a
3	CTCF	chr6:27279580-27279730	GM12868	blood:	n/a	n/a
4	E2F6	chr6:27279351-27280833	H1-hESC	embryonic stem cell:	n/a	n/a
5	MYC	chr6:27279600-27280114	H1-hESC	embryonic stem cell:	n/a	n/a
6	USF1	chr6:27279540-27279939	H1-hESC	embryonic stem cell:	n/a	n/a
7	RAD21	chr6:27279554-27280893	H1-hESC	embryonic stem cell:	n/a	chr6:27280634-27280653
8	E2F6	chr6:27279160-27280852	H1-hESC	embryonic stem cell:	n/a	n/a
9	USF1	chr6:27279533-27279954	H1-hESC	embryonic stem cell:	n/a	n/a
10	MXI1	chr6:27279615-27279878	H1-hESC	embryonic stem cell:	n/a	n/a
11	MAX	chr6:27279457-27280837	H1-hESC	embryonic stem cell:	n/a	n/a
12	ZNF143	chr6:27279632-27279831	H1-hESC	embryonic stem cell:	n/a	n/a
13	MAX	chr6:27279426-27280863	H1-hESC	embryonic stem cell:	n/a	n/a
14	E2F6	chr6:27279630-27280796	A549	lung:	n/a	n/a

No data

(count:2 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:27279187..27280995-chr6:27439360..27441808,2	MCF-7	breast:
2	chr6:27114741..27116846-chr6:27278241..27280578,2	K562	blood:

No data

Variant related genes	Relation type
POM121L2	TF binding region
ENSG00000265565	Chromatin interaction
ENSG00000096654	Chromatin interaction
ENSG00000184825	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs16897345	1.00[EUR][1000 genomes]
rs16897467	0.83[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3800317	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs58197429	1.00[AFR][1000 genomes]
rs61249083	1.00[EUR][1000 genomes]
rs73390697	1.00[EUR][1000 genomes]
rs9393815	1.00[AFR][1000 genomes]
rs9468060	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948921	chr6:26556890-27443957	Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	472 gene(s)	inside rSNPs	diseases
2	nsv1017328	chr6:27177147-27369588	Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
3	nsv883505	chr6:27210614-27300580	Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv883506	chr6:27271343-27288687	Bivalent/Poised TSS Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:27279400-27279800	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr6:27279400-27280000	Bivalent Enhancer	Brain Dorsolateral Prefrontal Cortex	brain
3	chr6:27279400-27280600	Active TSS	Gastric	stomach
4	chr6:27279400-27281000	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
5	chr6:27279400-27281000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
6	chr6:27279400-27281000	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
7	chr6:27279400-27281000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
8	chr6:27279600-27279800	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr6:27279600-27279800	Bivalent/Poised TSS	ES-UCSF4 Cell Line	embryonic stem cell
10	chr6:27279600-27279800	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
11	chr6:27279600-27279800	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
12	chr6:27279600-27279800	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
13	chr6:27279600-27279800	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr6:27279600-27279800	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr6:27279600-27279800	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr6:27279600-27279800	Bivalent Enhancer	Duodenum Smooth Muscle	Duodenum
17	chr6:27279600-27279800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
18	chr6:27279600-27279800	Bivalent Enhancer	Fetal Intestine Small	intestine
19	chr6:27279600-27279800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
20	chr6:27279600-27279800	Bivalent Enhancer	Fetal Stomach	stomach
21	chr6:27279600-27279800	Bivalent Enhancer	Psoas Muscle	Psoas
22	chr6:27279600-27279800	Active TSS	Right Atrium	heart
23	chr6:27279600-27279800	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
24	chr6:27279600-27279800	Bivalent Enhancer	GM12878-XiMat	blood
25	chr6:27279600-27280000	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr6:27279600-27280000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr6:27279600-27280000	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
28	chr6:27279600-27280000	Bivalent Enhancer	Colon Smooth Muscle	Colon
29	chr6:27279600-27280000	Bivalent Enhancer	Fetal Muscle Leg	muscle
30	chr6:27279600-27280000	Bivalent Enhancer	Placenta	Placenta
31	chr6:27279600-27280000	Bivalent Enhancer	Left Ventricle	heart
32	chr6:27279600-27280000	Bivalent Enhancer	Lung	lung
33	chr6:27279600-27280200	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr6:27279600-27280200	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
35	chr6:27279600-27280200	Enhancers	Spleen	Spleen
36	chr6:27279600-27280400	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
37	chr6:27279600-27280600	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
38	chr6:27279600-27280600	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr6:27279600-27280800	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr6:27279600-27280800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
41	chr6:27279600-27280800	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr6:27279600-27281000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
43	chr6:27279600-27281000	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
44	chr6:27279600-27281000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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