Variant report

Variant	rs16897638
Chromosome Location	chr8:100750119-100750120
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:100717456..100719730-chr8:100748168..100750293,2	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs16892266	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs16897555	0.86[AFR][1000 genomes]
rs16897573	0.91[YRI][hapmap]
rs16897575	0.97[AFR][1000 genomes]
rs16897584	1.00[AFR][1000 genomes]
rs16897587	1.00[AFR][1000 genomes]
rs16897589	1.00[AFR][1000 genomes]
rs16897595	1.00[AFR][1000 genomes]
rs16897612	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.91[YRI][hapmap];1.00[AFR][1000 genomes]
rs16897617	1.00[AFR][1000 genomes]
rs16897621	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs16897642	1.00[AFR][1000 genomes]
rs16897651	0.95[AFR][1000 genomes]
rs16897718	1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs16897726	1.00[YRI][hapmap]
rs1979115	1.00[YRI][hapmap]
rs1979116	1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs2187191	1.00[AFR][1000 genomes]
rs4734437	1.00[YRI][hapmap]
rs57286336	0.88[AFR][1000 genomes]
rs57560513	1.00[AFR][1000 genomes]
rs57905511	1.00[AFR][1000 genomes]
rs59060675	1.00[AFR][1000 genomes]
rs896008	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019256	chr8:100336249-100852803	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
2	nsv539698	chr8:100336249-100852803	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
3	esv2758167	chr8:100404151-100838624	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
4	esv2759633	chr8:100404151-100838624	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
5	nsv1029616	chr8:100442135-100796643	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
6	nsv1033944	chr8:100737321-100916345	Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:100710200-100785000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:100719600-100750600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr8:100725600-100779800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr8:100727000-100779000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr8:100727600-100751800	Weak transcription	HSMM	muscle
6	chr8:100728400-100765600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr8:100732800-100753200	Weak transcription	Right Ventricle	heart
8	chr8:100734200-100752000	Weak transcription	Placenta	Placenta
9	chr8:100734200-100779200	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr8:100734600-100761600	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr8:100734600-100767200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr8:100734600-100796600	Weak transcription	Pancreas	Pancrea
13	chr8:100736200-100751600	Weak transcription	Fetal Stomach	stomach
14	chr8:100736400-100758600	Weak transcription	Fetal Lung	lung
15	chr8:100737800-100766000	Weak transcription	Thymus	Thymus
16	chr8:100737800-100779000	Weak transcription	Left Ventricle	heart
17	chr8:100738000-100751000	Weak transcription	Fetal Intestine Large	intestine
18	chr8:100740600-100767400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr8:100742400-100767200	Weak transcription	Fetal Muscle Leg	muscle
20	chr8:100743200-100750400	Strong transcription	Primary B cells from cord blood	blood
21	chr8:100744800-100751800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr8:100744800-100767400	Weak transcription	Aorta	Aorta
23	chr8:100745000-100751400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr8:100745000-100767200	Weak transcription	Fetal Muscle Trunk	muscle
25	chr8:100745600-100750600	Weak transcription	Primary T cells from cord blood	blood
26	chr8:100746000-100764000	Weak transcription	Primary hematopoietic stem cells	blood
27	chr8:100747200-100751200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr8:100750000-100750200	ZNF genes & repeats	GM12878-XiMat	blood
29	chr8:100750000-100750400	Enhancers	Stomach Mucosa	stomach
30	chr8:100750000-100751000	Strong transcription	Primary T helper cells fromperipheralblood	blood
31	chr8:100750000-100751200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr8:100750000-100751200	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood

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