Variant report

Variant	rs16897865
Chromosome Location	chr8:124023583-124023584
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:124022618..124024326-chr8:124027548..124029467,2	K562	blood:
2	chr8:124022618..124024318-chr8:124024717..124027219,2	K562	blood:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs16897891	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032827	chr8:123668081-124270400	Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv529364	chr8:123763846-124373809	Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:124010000-124024200	Weak transcription	Gastric	stomach
2	chr8:124010000-124024200	Weak transcription	Right Atrium	heart
3	chr8:124010400-124025000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr8:124013600-124025800	Weak transcription	Osteobl	bone
5	chr8:124013600-124026200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr8:124014000-124024000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr8:124014200-124025400	Weak transcription	Duodenum Mucosa	Duodenum
8	chr8:124014200-124026600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr8:124014200-124026600	Weak transcription	Spleen	Spleen
10	chr8:124014200-124026800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr8:124014200-124026800	Weak transcription	Lung	lung
12	chr8:124014200-124026800	Weak transcription	Pancreas	Pancrea
13	chr8:124014200-124027000	Weak transcription	Brain Anterior Caudate	brain
14	chr8:124014200-124030400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr8:124014600-124024600	Weak transcription	Fetal Intestine Small	intestine
16	chr8:124014600-124026600	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr8:124014600-124038200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr8:124014800-124024200	Weak transcription	Fetal Muscle Trunk	muscle
19	chr8:124014800-124025400	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr8:124015000-124023800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr8:124015000-124024000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr8:124015000-124024200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr8:124015000-124024200	Weak transcription	Fetal Stomach	stomach
24	chr8:124015000-124026600	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr8:124015000-124026600	Weak transcription	Brain Germinal Matrix	brain
26	chr8:124015000-124026800	Weak transcription	Esophagus	oesophagus
27	chr8:124015000-124028200	Weak transcription	Fetal Lung	lung
28	chr8:124015200-124026000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
29	chr8:124015400-124029800	Weak transcription	Fetal Kidney	kidney
30	chr8:124015800-124034600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr8:124016600-124026200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr8:124016600-124030200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr8:124017800-124024600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr8:124017800-124026000	Weak transcription	Adipose Nuclei	Adipose
35	chr8:124019200-124025800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr8:124020800-124024400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr8:124020800-124027200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr8:124021000-124024200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr8:124021000-124026400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr8:124021000-124026800	Weak transcription	Aorta	Aorta
41	chr8:124021000-124037600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr8:124021200-124024200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr8:124021400-124024200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr8:124021600-124024200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr8:124021600-124024800	Weak transcription	Rectal Mucosa Donor 29	rectum
46	chr8:124021600-124025200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr8:124021800-124024200	Weak transcription	Fetal Muscle Leg	muscle
48	chr8:124022000-124027400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr8:124022200-124024000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
50	chr8:124022200-124024000	Weak transcription	GM12878-XiMat	blood

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