Variant report

Variant	rs16897891
Chromosome Location	chr8:124035034-124035035
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:123685733..123686360-chr8:124034348..124035415,3	MCF-7	breast:
2	chr8:124034202..124035072-chr8:124077917..124078543,3	K562	blood:
3	chr8:123684249..123687077-chr8:124033453..124036053,2	MCF-7	breast:
4	chr8:123690663..123691475-chr8:124034335..124035330,3	MCF-7	breast:
5	chr8:123885006..123886021-chr8:124034402..124035332,4	MCF-7	breast:
6	chr8:123745670..123746524-chr8:124034315..124035363,4	MCF-7	breast:
7	chr8:124034120..124035174-chr8:124166142..124167581,5	MCF-7	breast:
8	chr8:124026167..124028000-chr8:124033709..124035988,2	MCF-7	breast:
9	chr8:124034555..124035357-chr8:124077782..124078492,2	MCF-7	breast:
10	chr8:124034586..124035350-chr8:124203347..124204148,2	MCF-7	breast:
11	chr8:123789580..123794380-chr8:124031153..124035813,6	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000272043	Chromatin interaction
ENSG00000272384	Chromatin interaction
ENSG00000178764	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11991436	1.00[MEX][hapmap]
rs11992098	1.00[MEX][hapmap]
rs16897571	1.00[MEX][hapmap]
rs16897576	1.00[MEX][hapmap]
rs16897633	1.00[MEX][hapmap]
rs16897865	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16897903	1.00[MEX][hapmap];0.85[YRI][hapmap]
rs16897940	1.00[MEX][hapmap]
rs16898127	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032827	chr8:123668081-124270400	Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv529364	chr8:123763846-124373809	Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
3	nsv429939	chr8:124027819-124180819	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:124014600-124038200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:124021000-124037600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr8:124024000-124039200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr8:124024200-124038200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
5	chr8:124024400-124037200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr8:124025400-124042400	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr8:124025800-124036800	Strong transcription	Osteobl	bone
8	chr8:124026000-124053600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr8:124026400-124042600	Weak transcription	Stomach Mucosa	stomach
10	chr8:124026800-124038400	Strong transcription	NHEK	skin
11	chr8:124030600-124037200	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr8:124030800-124036400	Weak transcription	Fetal Brain Male	brain
13	chr8:124030800-124038000	Strong transcription	Primary T helper cells fromperipheralblood	blood
14	chr8:124030800-124047800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr8:124031200-124038200	Weak transcription	Rectal Smooth Muscle	rectum
16	chr8:124031400-124036600	Weak transcription	Brain Angular Gyrus	brain
17	chr8:124031400-124036600	Weak transcription	Small Intestine	intestine
18	chr8:124031400-124038200	Strong transcription	Fetal Thymus	thymus
19	chr8:124031400-124053400	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr8:124031800-124036600	Strong transcription	GM12878-XiMat	blood
21	chr8:124031800-124037800	Strong transcription	Primary T helper cells PMA-I stimulated	--
22	chr8:124032000-124037600	Weak transcription	Aorta	Aorta
23	chr8:124032200-124036400	Weak transcription	Brain Germinal Matrix	brain
24	chr8:124032200-124036400	Weak transcription	Ovary	ovary
25	chr8:124032200-124036600	Strong transcription	Primary B cells from peripheral blood	blood
26	chr8:124032200-124037600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr8:124032200-124037800	Weak transcription	Spleen	Spleen
28	chr8:124032200-124038200	Strong transcription	Primary T cells fromperipheralblood	blood
29	chr8:124032200-124039200	Strong transcription	Primary T cells from cord blood	blood
30	chr8:124032200-124039200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr8:124032200-124051200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr8:124032400-124036400	Weak transcription	Brain Anterior Caudate	brain
33	chr8:124032400-124036400	Weak transcription	Fetal Brain Female	brain
34	chr8:124032400-124036400	Weak transcription	HSMMtube	muscle
35	chr8:124032400-124036800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr8:124032400-124037600	Weak transcription	Pancreas	Pancrea
37	chr8:124032400-124037600	Weak transcription	Stomach Smooth Muscle	stomach
38	chr8:124032400-124038400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
39	chr8:124032400-124041200	Strong transcription	Monocytes-CD14+_RO01746	blood
40	chr8:124032400-124042400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
41	chr8:124032400-124042600	Weak transcription	H1 Cell Line	embryonic stem cell
42	chr8:124032400-124042600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr8:124032400-124046000	Weak transcription	Lung	lung
44	chr8:124032400-124047600	Weak transcription	Esophagus	oesophagus
45	chr8:124032400-124047600	Weak transcription	Gastric	stomach
46	chr8:124032400-124051600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr8:124032400-124053800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr8:124032600-124036400	Weak transcription	Thymus	Thymus
49	chr8:124032600-124037600	Weak transcription	Cortex derived primary cultured neurospheres	brain
50	chr8:124032600-124037600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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